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Repository mirror & CI
2022-06-10 14:18:04 +00:00
parent 93acc3654a c37369b5a5
commit a86f359616
33 changed files with 538 additions and 174 deletions
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1
TODO.md
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@@ -42,7 +42,6 @@ Name | Buildsystem | Category | User | Need help | Dependency
[geopm](https://geopm.github.io/) | autotools | power | Alessandro-Barbieri | ✖ | ✔
[warewulf](https://warewulf.lbl.gov/) | autotools | cluster | Alessandro-Barbieri | ✖ | ✔
[scalasca](https://scalasca.org/) | autotools | cluster | Alessandro-Barbieri | ✖ | ✔
[scorep](https://www.vi-hps.org/projects/score-p/) | autotools | cluster | Alessandro-Barbieri | ✖ | ✔
[jmodelica](https://github.com/jnorthrup/jmodelica) | autotools | science | Alessandro-Barbieri | ✔ | ✔
[flux-core](https://github.com/flux-framework/flux-core) | autotools | cluster | Alessandro-Barbieri | ✔ | ✔
[GPI-2](https://github.com/cc-hpc-itwm/GPI-2) | autotools | cluster | Alessandro-Barbieri | ✖ | ✔

1
dev-libs/cubelib/Manifest Normal file
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@@ -0,0 +1 @@
DIST cubelib-4.7.tar.gz 6163552 BLAKE2B e07e78011501fe19240f22133cf9a9202176ca21410412be19674d43e8177ce7683cb19414eacacf6a56f261602414db55ba65abc8948846c1dbbc0737636fc9 SHA512 cf328b3300170ba832bda13374f7e8e59a920308fc1604f03eb5f172ab6dd6d3ccd0b6517eb68bf58b07a08174dded0f80fe7f37ca63727ce397e095801864f1

38
dev-libs/cubelib/cubelib-4.7.ebuild Normal file
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@@ -0,0 +1,38 @@
# Copyright 2019-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit autotools
DESCRIPTION="General purpose C++ library and tools"
HOMEPAGE="https://www.scalasca.org/scalasca/software/cube-4.x"
SRC_URI="https://apps.fz-juelich.de/scalasca/releases/cube/${PV}/dist/${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64"
DEPEND="dev-cpp/gtest"
src_prepare() {
rm -r vendor/googletest || die
default
eautoreconf
}
src_configure() {
local myconf=(
--disable-platform-mic
)
econf "${myconf[@]}"
}
src_install() {
default
mv "${ED}/usr/share/doc/cubelib/example" "${ED}/usr/share/doc/${PF}/" || die
rm -r "${ED}/usr/share/doc/cubelib" || die
dodoc OPEN_ISSUES README
docompress -x "${ED}/usr/share/doc/${PF}/example"
find "${ED}" -name '*.a' -delete || die
}

8
dev-libs/cubelib/metadata.xml Normal file
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@@ -0,0 +1,8 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>lssndrbarbieri@gmail.com</email>
<name>Alessandro Barbieri</name>
</maintainer>
</pkgmetadata>

1
dev-libs/cubew/Manifest Normal file
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@@ -0,0 +1 @@
DIST cubew-4.7.tar.gz 1347200 BLAKE2B 5083ca74a1125e81bc2a5493bb26119bbb478a16847cc4ef3cf6afbad9289bcffff8a0bc2b480b9cf711560d33f5a7fa207b7a20ffde343eac8e05385d3e778f SHA512 21bfef1fadb93d6089503ee86b54bbd2aca67a3a0f33ad64a1bd50b507dbf1a3047b4a454f9225f0379353d31f74e4b6a3a6851b776f44bd0ececb3322466f3d

51
dev-libs/cubew/cubew-4.7.ebuild Normal file
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@@ -0,0 +1,51 @@
# Copyright 2019-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit autotools
DESCRIPTION="High performance C Writer library"
HOMEPAGE="https://www.scalasca.org/scalasca/software/cube-4.x"
SRC_URI="https://apps.fz-juelich.de/scalasca/releases/cube/${PV}/dist/${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64"
IUSE="advanced-memory memory-tracking memory-tracing +zlib"
RDEPEND="
sys-libs/binutils-libs
zlib? ( sys-libs/zlib )
"
DEPEND="${RDEPEND}"
REQUIRED_USE="
memory-tracking? ( advanced-memory )
memory-tracing? ( advanced-memory )
"
src_prepare() {
default
eautoreconf
}
src_configure() {
local myconf=(
--disable-platform-mic
$(use_with advanced-memory)
$(use_with memory-tracking)
$(use_with memory-tracing)
$(use_with zlib compression)
)
econf "${myconf[@]}"
}
src_install() {
default
mv "${ED}/usr/share/doc/cubew" "${ED}/usr/share/doc/${PF}" || die
dodoc OPEN_ISSUES README
docompress -x "${ED}/usr/share/doc/${PF}/example"
find "${ED}" -name '*.la' -delete || die
find "${ED}" -name '*.a' -delete || die
}

13
dev-libs/cubew/metadata.xml Normal file
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@@ -0,0 +1,13 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>lssndrbarbieri@gmail.com</email>
<name>Alessandro Barbieri</name>
</maintainer>
<use>
<flag name="advanced-memory">Enables advanced memory features such as usage of an external memory allocator</flag>
<flag name="memory-tracking">Enables internal memory tracking</flag>
<flag name="memory-tracing">Enables internal memory tracing more intensive memory usage report.</flag>
</use>
</pkgmetadata>

1
dev-python/check-manifest/Manifest
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@@ -1 +0,0 @@
DIST check-manifest-0.46.tar.gz 34419 BLAKE2B 9152ca60756c503c744192ab72668858ba7fe491745c48337aab2b135f9d491319bb383af901110abf61a7b439e01bba4d5c22f2042aca6cf1e0b990ce15726f SHA512 301caa9c95f4ae3655c290217867df7e9de9967c1a603a32e4a0e220651de555c3dd716b109b1b1dda8e2547396bce8b742fd08091a4879943aefc56e8008d96

38
dev-python/check-manifest/check-manifest-0.46.ebuild
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@@ -1,38 +0,0 @@
# Copyright 1999-2020 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI="7"
PYTHON_COMPAT=( python3_{8..9} )
DISTUTILS_USE_SETUPTOOLS=rdepend
inherit distutils-r1
DESCRIPTION="Tool to check the completeness of MANIFEST.in for Python packages"
HOMEPAGE="
https://github.com/mgedmin/check-manifest
https://pypi.org/project/check-manifest/
"
SRC_URI="https://github.com/mgedmin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="MIT"
SLOT="0"
KEYWORDS="~amd64"
RDEPEND="
dev-python/toml[${PYTHON_USEDEP}]
"
DEPEND="
${RDEPEND}
test? (
dev-python/mock[${PYTHON_USEDEP}]
)
"
distutils_enable_tests pytest
python_test() {
epytest \
--deselect tests.py::Tests::test_build_sdist_pep517_isolated \
--deselect tests.py::Tests::test_build_sdist_pep517_no_isolation
}

12
dev-python/check-manifest/metadata.xml
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@@ -1,12 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<longdescription lang="en">
Are you a Python developer? Have you uploaded packages to the Python Package Index? Have you accidentally uploaded broken packages with some files missing? If so, check-manifest is for you.
</longdescription>
<upstream>
<remote-id type="github">mgedmin/check-manifest</remote-id>
<remote-id type="pypi">check-manifest</remote-id>
</upstream>
</pkgmetadata>

1
dev-util/rust-analyzer/rust-analyzer-20220606.ebuild
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@@ -69,6 +69,7 @@ CRATES="
libmimalloc-sys-0.1.24
lock_api-0.4.7
log-0.4.16
lsp-server-0.6.0
lsp-types-0.93.0
matchers-0.1.0
matches-0.1.9

2
net-misc/maestral/Manifest
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@@ -1,3 +1,3 @@
DIST maestral-1.5.2.tar.gz 8277812 BLAKE2B df901a0a98a51f3c611cd3aa3ff4d4662fa10cdd595df2214f1a4c9fd0da8c787531a21671261df7196869d1822c69884299f2bcecd0e4190bb81fcb55a8885f SHA512 eafed2a3dbc55e3ee9417da393864ec94c76724949855805e99e3c65c29b1d33aeeb2ac063c0a4c115d3f03c002dbe899b6ec1ec6ebcb0a29386a39eabdeb769
DIST maestral-1.5.3.tar.gz 8280040 BLAKE2B dcda43880cea3fb00098b6bf87e43318a523a7c9d83886efff58be715cde17f67504b31735a006b951963e5cf0ef70b4b6431cb84200722cae186053a01edd63 SHA512 aa21277623f4e6f3283cd989be910eeb1caa3a842abca595b27a551c1c9bd1e7ef083e495ee0f096190accd91835939cb2f4a26624feae0046d8770d53aaac2f
DIST maestral-1.6.2.tar.gz 7982890 BLAKE2B 5a5b5f1c3a3e9000379c720b820c79ff3b6acabb2d7ca2716980299434dd9f6a900b56a4ad0808e9253f292c8d4d62680306071233b85313dad128717bbbb1f8 SHA512 ff02c89e9b1367bd9485b513c66d09912f88a6b45149c5764d8566c2a6ee2713adbb07de9bbe914b602d5aa06abe734af3e73e98bdba4b75a3bdcfba7c82979d
DIST maestral-1.6.3.tar.gz 7984215 BLAKE2B 1abf2d35b3637bdaa72d1f545d7ab235e0549bd184c052099aed504b2435db1ab3b395360b053b69ccfa5ef048457f85fb83ef900f6aac1905ef09f109cbcb2d SHA512 58185048a5603a1d5883d44c2bd652515598e99a632aaeedbf84102faf0dcd1cf2172240563ecc2bc2e804bd90ca59d6599255d3d97c9844d6dacd7f05952859

0
net-misc/maestral/maestral-1.6.2.ebuild → net-misc/maestral/maestral-1.6.3.ebuild
View File

6
profiles/package.mask
View File

@@ -47,3 +47,9 @@ dev-python/threadloop
# Anna Vyalkova <cyber+gentoo@sysrq.in> (2022-06-04)
# Incompatible with recent pytest. No revdeps. Removal on 2022-07-05.
dev-python/thriftrw
# Alexey Sokolov <alexey+gentoo@asokolov.org> (2022-06-10)
# Dead upstream. Doesn't work with py3.10. Removal on 2022-07-15.
# https://bugs.gentoo.org/848399
# Feel free to unmask if you want to take maintainership.
net-p2p/nuxhash

147
sci-misc/linuxcnc/linuxcnc-9999.ebuild
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@@ -1,101 +1,101 @@
# Copyright 1999-2015 Gentoo Foundation
# Copyright 1999-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
# $Header: $
# Thanks to the original author's code, slis@gentoo.org's code, because the original code is outdated, this ebuild has been modified portably
EAPI="7"
EAPI=8
PYTHON_COMPAT=( python3_10 )
PYTHON_REQUIRED_USE="tk"
inherit autotools eutils flag-o-matic multilib python-single-r1 git-r3
inherit autotools desktop git-r3 python-single-r1
DESCRIPTION="LinuxCNC "
DESCRIPTION="LinuxCNC"
HOMEPAGE="http://linuxcnc.org/"
#SRC_URI="mirror://sourceforge/gentoocnc/distfiles/${P}.tar.gz"
#SRC_URI="https://github.com/LinuxCNC/linuxcnc/archive/2.7.zip"
EGIT_REPO_URI="https://github.com/LinuxCNC/linuxcnc.git https://gitclone.com/github.com/LinuxCNC/linuxcnc.git"
S="${WORKDIR}"/linuxcnc-9999/src
LICENSE="LGPL-3"
SLOT="linuxcnc-9999"
KEYWORDS="~amd64 ~x86"
IUSE="+python +uspace +X +gtk -rt gstreamer modbus simulator usb"
SLOT="9999"
KEYWORDS=""
IUSE="+gtk modbus rt simulator usb +X"
# TODO: add shmdrv use flag
# --disable-python uses python anyways and fails so python is a required use flag
REQUIRED_USE="
python
python? ( ${PYTHON_REQUIRED_USE} )
rt? ( !simulator )
"
DEPEND="dev-lang/tcl
dev-lang/tk
dev-tcltk/tkimg
dev-tcltk/tclx
dev-libs/boost[python]
modbus? ( <dev-libs/libmodbus-3.1 )
dev-tcltk/bwidget
gtk? ( x11-libs/gtk+ )
gstreamer? (
dev-python/gst-python:0.10
media-libs/gst-plugins-base:0.10
)
|| (
net-analyzer/openbsd-netcat
net-analyzer/netcat6
)
x11-libs/libXinerama
usb? ( virtual/libusb )
dev-lang/python:3.10[tk]
$(python_gen_cond_dep 'dev-python/lxml[${PYTHON_USEDEP}]')
$(python_gen_cond_dep 'dev-python/numpy[${PYTHON_USEDEP}]')
$(python_gen_cond_dep 'dev-python/configobj[${PYTHON_USEDEP}]')
$(python_gen_cond_dep 'dev-python/pillow[tk,${PYTHON_USEDEP}]')
media-libs/mesa
x11-apps/mesa-progs
X? (
x11-libs/libXaw
$(python_gen_cond_dep 'dev-python/python-xlib[${PYTHON_USEDEP}]')
)
rt? ( sys-kernel/rt-sources )
virtual/opengl
virtual/glu
DEPEND="
${PYTHON_DEPS}
dev-lang/tcl
dev-lang/tk
dev-tcltk/bwidget
dev-tcltk/tclx
dev-tcltk/tkimg
media-gfx/graphviz
media-libs/mesa
net-firewall/iptables
sys-devel/gettext
sys-process/procps
sys-process/psmisc
net-firewall/iptables
media-gfx/graphviz
$(python_gen_cond_dep 'dev-python/pyopengl[${PYTHON_USEDEP}]')
$(python_gen_cond_dep 'dev-python/pygobject[${PYTHON_USEDEP}]')
x11-libs/gtksourceview:3.0
sys-process/psmisc
x11-libs/libXinerama
x11-apps/mesa-progs
virtual/glu
virtual/opengl
$(python_gen_cond_dep '
dev-libs/boost[python,${PYTHON_USEDEP}]
dev-python/configobj[${PYTHON_USEDEP}]
dev-python/lxml[${PYTHON_USEDEP}]
dev-python/numpy[${PYTHON_USEDEP}]
dev-python/pillow[tk,${PYTHON_USEDEP}]
dev-python/pygobject[${PYTHON_USEDEP}]
dev-python/pyopengl[${PYTHON_USEDEP}]
')
|| (
net-analyzer/openbsd-netcat
net-analyzer/netcat
)
modbus? ( <dev-libs/libmodbus-3.1 )
gtk? ( x11-libs/gtk+ )
rt? ( sys-kernel/rt-sources )
usb? ( virtual/libusb )
X? (
x11-libs/libXaw
$(python_gen_cond_dep 'dev-python/python-xlib[${PYTHON_USEDEP}]')
)
"
RDEPEND="
${DEPEND}
$(python_gen_cond_dep 'dev-python/yapps[${PYTHON_USEDEP}]')
"
RESTRICT="bindist"
REQUIRED_USE="
${PYTHON_REQUIRED_USE}
rt? ( !simulator )
"
RDEPEND="${DEPEND}
python? ( dev-python/yapps )"
src_prepare() {
default
eautoreconf
default
eautoreconf
}
src_configure() {
#myconf="--prefix=${EPREFIX}/usr --with-kernel-headers=/usr/src/linux/ $(use_with modbus libmodbus)"
myconf="--prefix=${EPREFIX}/usr --enable-non-distributable=yes --with-boost-python=boost_python310 $(use_with modbus libmodbus)"
local myconf=(
--enable-non-distributable=yes
--with-boost-python=boost_python310
--with-kernel-headers=/usr/src/linux/
--with-python="${PYTHON}"
$(use_with modbus libmodbus)
)
use gtk || myconf+=( "--disable-gtk" )
use rt && myconf+=( "--with-rt-preempt" )
use simulator && myconf+=( "--with-realtime=uspace" )
use usb || myconf+=( "--without-libusb-1.0" )
# use rtai && myconf+=( "--with-realtime=${EPREFIX}/usr/realtime" "--with-module-dir=${EPREFIX}/usr/$(get_libdir)/linuxcnc/rtai/" )
use X && myconf+=( "--with-x" )
use !gtk && myconf="${myconf} --disable-gtk"
use rt && myconf="${myconf} --with-realtime=uspace"
use simulator && myconf="${myconf} --with-realtime=uspace"
use !usb && myconf="${myconf} --without-libusb-1.0"
# use rtai && myconf="${myconf} --with-realtime=${EPREFIX}/usr/realtime --with-module-dir=${EPREFIX}/usr/lib/linuxcnc/rtai/"
use X && myconf="${myconf} --with-x"
# TODO: fix that - get python version
#use python && myconf="${myconf} --with-python=/usr/bin/python3.10"
use !python && myconf="${myconf} --disable-python"
econf ${myconf}
econf "${myconf[@]}"
}
src_install() {
@@ -121,7 +121,6 @@ src_install() {
}
pkg_postinst() {
elog "The compiled software may not be redistributed due to use of packages with incompatible licenses."
elog "Opening machine configuration files from older Versions can crash the application as it cannot load old named modules, e.g. probe_parport.so not found"
elog "This is not a Gentoo- or build related error. It looks like linuxcnc 2.8 will have some kind of converter for them."
elog "If you created them with stepconf. You can just open the stepconf file and create them new. Don't forget to backup any manual changes (e.g. backlash!) from the .hal and .ini files and make them again."

21
sci-misc/linuxcnc/metadata.xml
View File

@@ -1,14 +1,15 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer>
<email>jack9603301@163.com</email>
</maintainer>
<use>
<flag name="rt">Build with RT_PREEMPT threads modules</flag>
<flag name="simulator">Build with posix threads (no realtime)</flag>
<flag name="modbus">Build modbus libraries</flag>
<flag name="xenomai">Build with xenomai userland threads</flag>
<flag name="rtai">Build with realtime threads support</flag>
</use>
<maintainer type="person">
<email>jack9603301@163.com</email>
<name>Chunhui Ouyang</name>
</maintainer>
<use>
<flag name="rt">Build with RT_PREEMPT threads modules</flag>
<flag name="simulator">Build with posix threads (no realtime)</flag>
<flag name="modbus">Build modbus libraries</flag>
<!--<flag name="xenomai">Build with xenomai userland threads</flag>-->
<!--<flag name="rtai">Build with realtime threads support</flag>-->
</use>
</pkgmetadata>

2
sys-cluster/OpenHPC-meta/OpenHPC-meta-2.1.ebuild
View File

@@ -68,6 +68,7 @@ RDEPEND="
sys-cluster/extrae[${PYTHON_SINGLE_USEDEP}]
sys-cluster/mpi-benchmarks
sys-cluster/osu-micro-benchmarks
sys-cluster/scorep[mpi,unwind]
)
python? (
@@ -107,7 +108,6 @@ RDEPEND="
# perf-tools
#scalasca
#tau
#scorep
# slurm-server
#pdsh-slurm

16
sys-cluster/SOS/SOS-1.5.0-r1.ebuild
View File

@@ -11,7 +11,7 @@ DESCRIPTION="implementation of the OpenSHMEM specification"
HOMEPAGE="https://github.com/Sandia-OpenSHMEM/SOS"
SRC_URI="https://github.com/Sandia-OpenSHMEM/SOS/archive/refs/tags/v${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD public-domain mpich2"
LICENSE="BSD public-domain"
SLOT="0"
KEYWORDS="~amd64"
IUSE_OFI_MR="
@@ -26,13 +26,12 @@ IUSE_TOTAL_DATA_ORDERING="
"
IUSE="${IUSE_OFI_MR} ${IUSE_TOTAL_DATA_ORDERING} av-map bounce-buffers cma completion-polling cxx
debug error-checking fortran long-fortran-header manual-progress memcpy ofi ofi-fence openmp
+pmi-mpi pmi-simple portals4 profiling pthread-mutexes remote-virtual-addressing threads
+pmi portals4 profiling pthread-mutexes remote-virtual-addressing threads
thread-completion ucx xpmem"
RDEPEND="
ofi? ( sys-block/libfabric )
pmi-simple? ( sys-cluster/pmix[pmi] )
pmi-mpi? ( virtual/mpi )
pmi? ( || ( sys-cluster/slurm sys-cluster/pmix[pmi] ) )
portals4? ( sys-cluster/portals4 )
ucx? ( sys-cluster/ucx )
xpmem? ( sys-kernel/xpmem )
@@ -42,7 +41,6 @@ DEPEND="${RDEPEND}"
REQUIRED_USE="
^^ ( ${IUSE_OFI_MR/+/} )
^^ ( ${IUSE_TOTAL_DATA_ORDERING/+/} )
^^ ( pmi-mpi pmi-simple )
?? ( cma xpmem )
?? ( ofi portals4 )
"
@@ -79,7 +77,7 @@ src_prepare() {
}
src_configure() {
if use pmi-mpi; then
if use pmi; then
export CC=mpicc
export CXX=mpicxx
fi
@@ -96,6 +94,7 @@ src_configure() {
local myconf=(
--disable-picky
--disable-pmi-simple
--disable-rpm-prefix
--enable-ofi-mr="${ofimr}"
--enable-total-data-ordering="${tda}"
@@ -111,8 +110,7 @@ src_configure() {
$(use_enable memcpy)
$(use_enable ofi-fence)
$(use_enable openmp)
$(use_enable pmi-mpi)
$(use_enable pmi-simple)
$(use_enable pmi pmi-mpi)
$(use_enable profiling)
$(use_enable pthread-mutexes)
$(use_enable remote-virtual-addressing)
@@ -121,7 +119,7 @@ src_configure() {
$(use_with cma)
$(use_with ofi)
$(use_with pmi-mpi pmi)
$(use_with pmi)
$(use_with portals4)
$(use_with ucx)
$(use_with xpmem)

3
sys-cluster/SOS/metadata.xml
View File

@@ -19,8 +19,7 @@
<!--<flag name="nonblocking-fence">By default, shmem_fence() is equivalent to shmem_quiet(), which can be a lengthy operation. Enabling this feature results in the ordering point being moved from the shmem_fence() to the next put-like call, which can help improve overlap in some cases.</flag>-->
<flag name="ofi">Use libfabric as transport layer</flag>
<flag name="ofi-fence">Use FI_FENCE feature to optimize put-with-signal operations</flag>
<flag name="pmi-mpi">Use MPI for process management</flag>
<flag name="pmi-simple">Include support for interfacing with a PMI 1.0 launcher. The launcher must be provided by a separate package, such as MPICH, Hydra, or SLURM.</flag>
<flag name="pmi">Use MPI for process management</flag>
<flag name="portals4">Use portals4 as transport layer</flag>
<flag name="profiling">Enable profiling (pshmem) interface</flag>
<flag name="pthread-mutexes">Use pthread mutexes instead of internal queueing locks</flag>

6
sys-cluster/adios2/adios2-2.8.1.ebuild → sys-cluster/adios2/adios2-2.8.1-r1.ebuild
View File

@@ -109,7 +109,7 @@ src_configure() {
-DADIOS2_USE_SZ="$(usex szip)"
-DADIOS2_USE_ZeroMQ="$(usex zeromq)"
-DADIOS2_USE_ZFP="$(usex zfp)"
-DBUILD_TESTING=$(usex test)
-DBUILD_TESTING="$(usex python)"
)
cmake_src_configure
}
@@ -121,10 +121,6 @@ src_prepare() {
cmake_src_prepare
}
src_compile() {
cmake_src_compile
}
src_install() {
cmake_src_install
dodoc ReadMe.md

2
sys-cluster/mpi-benchmarks/files/mpi-benchmarks-2021.3-makefile.patch
View File

@@ -116,7 +116,7 @@
-$(BINARY): $(IMB_OBJ) $(BECHMARK_SUITE_OBJ) $(ADDITIONAL_OBJ) $(YAML_CPP_LIB)
- $(CXX) $(CPPFLAGS) $(CXXFLAGS) -o $@ $^ $(LDFLAGS)
+$(BINARY): $(IMB_OBJ) $(BECHMARK_SUITE_OBJ) $(ADDITIONAL_OBJ)
+ $(CXX) $(CPPFLAGS) $(CXXFLAGS) -fPIE -o $@ $^ $(LDFLAGS) $(YAML_CPP_LIB) -lmpi_cxx -lmpi
+ $(CXX) $(CPPFLAGS) $(CXXFLAGS) -fPIE -o $@ $^ $(LDFLAGS) $(YAML_CPP_LIB)
%.o: %.cpp
- $(CXX) $(CPPFLAGS) $(CXXFLAGS) -c -o $@ $<

6
sys-cluster/mpi-benchmarks/mpi-benchmarks-2021.3.ebuild
View File

@@ -22,6 +22,12 @@ DEPEND="${RDEPEND}"
PATCHES=( "${FILESDIR}/${P}-makefile.patch" )
src_configure() {
export CC=mpicc
export CXX=mpicxx
default
}
src_install() {
dodoc ReadMe_IMB.txt README.md
dobin IMB-*

1
sys-cluster/opari2/Manifest Normal file
View File

@@ -0,0 +1 @@
DIST opari2-2.0.6.tar.gz 1355638 BLAKE2B 343f747de622fd6bf03c8aa7c250c6293868427e9e5f6e077a72b618afd683b6f4e30d8ff8e1c2f01b28bbb401e1522df9803006bd109c859b688b6cbf383a0e SHA512 253dd353c3dbda148a5ca22124163362528db76343ec668d1fa6f45556befb6ef44c1b6cf2d8977ba712866c5f95db5d1461b943b14c2418cb45c3627882b573

13
sys-cluster/opari2/metadata.xml Normal file
View File

@@ -0,0 +1,13 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>lssndrbarbieri@gmail.com</email>
<name>Alessandro Barbieri</name>
</maintainer>
<longdescription lang="en">
OPARI2 is a tool to automatically instrument C, C++ and Fortran source code files in which pragmas (C/C++) or directives (Fortran) are used. Currently OpenMP and POMP user instrumentation are supported. Function calls to the pomp2_lib.h and pomp2_user_lib.h are inserted around or as replacement for supported directives. By implementing the respective APIs, detailed measurements regarding the runtime behavior of an applications can be made. A conforming implementation needs to implement all functions associated with the supported programming model. The original OPARI was developed to perform source-to-source instrumentation of OpenMP programs. Therefore the main focus of this document still lies on support for OpenMP.
OpenMP 3.0 introduced tasking to OpenMP. To support this feature the POMP2 adapter needs to do some bookkeeping in regard to specific task IDs. The pomp2_lib.c provided with this package includes the necessary code so it is strongly advised to use it as a basis for writing an adapter to your own tool.
A detailed description of the first OPARI version has been published by Mohr et al. in "Design and prototype of a performance tool interface for OpenMP" (Journal of supercomputing, 23, 2002).
</longdescription>
</pkgmetadata>

29
sys-cluster/opari2/opari2-2.0.6.ebuild Normal file
View File

@@ -0,0 +1,29 @@
# Copyright 2019-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
inherit autotools
DESCRIPTION="OpenMP Pragma And Region Instrumentor"
HOMEPAGE="https://www.vi-hps.org/projects/score-p"
SRC_URI="https://perftools.pages.jsc.fz-juelich.de/cicd/${PN}/tags/${P}/${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64"
RDEPEND=""
DEPEND="${RDEPEND}"
src_prepare() {
default
eautoreconf
}
src_install() {
default
dodoc OPEN_ISSUES README
find "${ED}" -name '*.la' -delete || die
find "${ED}" -name '*.a' -delete || die
}

4
sys-cluster/portals4/portals4-1.0_alpha1_p20190109-r3.ebuild
View File

@@ -32,12 +32,11 @@ RDEPEND="
dev-libs/libxml2
knem? ( sys-cluster/knem )
pmi? ( sys-cluster/pmix[pmi] )
pmi? ( || ( sys-cluster/slurm sys-cluster/pmix[pmi] ) )
ppe? ( sys-kernel/xpmem )
"
DEPEND="
${RDEPEND}
test? ( sys-cluster/pmix[pmi] )
"
PATCHES=( "${FILESDIR}/${PN}-fix-PPE-related-compile-and-link-errors.patch" )
@@ -47,6 +46,7 @@ REQUIRED_USE="
knem? ( transport_shmem )
reliable-udp? ( transport_udp )
test? ( pmi )
"
src_prepare() {

1
sys-cluster/scorep/Manifest Normal file
View File

@@ -0,0 +1 @@
DIST scorep-7.1.tar.gz 19979160 BLAKE2B be0f3d6534410c9c510e22110f92227dcdf52b77eba735913c92bcd67fed915d59a6988090f90abd777a9c4b0d821de7264d7b40d0687c8f684e4af72e42c43b SHA512 19da94e64eb9e3fb27f2c37087df2acc511645aa16abf80bb73c19eddab9efa004325d64eb0031df2f10a250976c9c2b1faf3169ebd32909703bf678c9abeb1a

16
sys-cluster/scorep/metadata.xml Normal file
View File

@@ -0,0 +1,16 @@
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<maintainer type="person">
<email>lssndrbarbieri@gmail.com</email>
<name>Alessandro Barbieri</name>
</maintainer>
<use>
<flag name="gcc-plugin">Enable support for the GCC plug-in instrumentation</flag>
<flag name="llvm">Enable the user library wrapping feature</flag>
<flag name="online-access">Enable Online Access</flag>
<flag name="opencl">Build with libOpenCL support</flag>
<flag name="openshmem">Use the SHMEM compiler</flag>
<flag name="pmi">Build with libpmi support</flag>
</use>
</pkgmetadata>

126
sys-cluster/scorep/scorep-7.1.ebuild Normal file
View File

@@ -0,0 +1,126 @@
# Copyright 2019-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
LLVM_MAX_SLOT=14
inherit autotools llvm fortran-2 toolchain-funcs
DESCRIPTION="Scalable Performance Measurement Infrastructure for Parallel Codes"
HOMEPAGE="https://www.vi-hps.org/projects/score-p"
SRC_URI="https://perftools.pages.jsc.fz-juelich.de/cicd/${PN}/tags/${P}/${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64"
IUSE="debug gcc-plugin llvm mpi online-access opencl openshmem pmi unwind"
CDEPEND="
dev-libs/cubelib
dev-libs/cubew
dev-libs/papi
sys-cluster/opari2
sys-cluster/otf2
sys-libs/binutils-libs:=
sys-libs/zlib
llvm? (
sys-devel/clang:"${LLVM_MAX_SLOT}"
<sys-devel/llvm-"${LLVM_MAX_SLOT}":=
|| (
sys-devel/llvm:12
sys-devel/llvm:13
sys-devel/llvm:"${LLVM_MAX_SLOT}"
)
)
mpi? ( virtual/mpi )
openshmem? ( sys-cluster/SOS )
pmi? ( || ( sys-cluster/slurm sys-cluster/pmix[pmi] ) )
unwind? ( || ( sys-libs/libunwind sys-libs/llvm-libunwind ) )
"
RDEPEND="
${CDEPEND}
opencl? ( virtual/opencl )
"
DEPEND="
${CDEPEND}
opencl? ( dev-util/opencl-headers )
"
#PATCHES=( "${FILESDIR}/${P}-respect-flags.patch" )
pkg_setup() {
llvm_pkg_setup
fortran-2_pkg_setup
}
src_prepare() {
rm -r vendor || die
default
eautoreconf
}
src_configure() {
tc-export CC CXX FC F77 CPP
if use openshmem; then
export SHMEMCC="oshcc"
export SHMEMCXX="oshc++"
export SHMEMF77="oshfort"
export SHMEMFC="oshfort"
export SHMEM_CPPFLAGS="${CPPFLAGS}"
export SHMEM_CFLAGS="${CFLAGS}"
export SHMEM_CXXFLAGS="${CXXFLAGS}"
export SHMEM_FFLAGS="${FFLAGS}"
export SHMEM_FCFLAGS="${FCFLAGS}"
export SHMEM_LDFLAGS="${LDFLAGS}"
export SHMEM_LIBS="-lsma"
export SHMEM_LIB_NAME="libsma"
export SHMEM_NAME="sandia-openshmem"
fi
local myconf=(
--disable-cuda
--disable-experimental-platform
--disable-openacc
--disable-platform-mic
--disable-static
--enable-shared
--with-cubelib
--with-cubew
--with-libbfd
--with-opari2
--with-otf2
--with-papi-header="/usr/include"
--with-papi-lib="/usr/$(get_libdir)"
--without-libcuda
--without-libcudart
--without-libcupti
--without-liblustreapi
--without-libnvidia-ml
--without-librca
--without-pdt
$(use_enable debug)
$(use_with gcc-plugin)
$(use_with online-access)
$(use_with opencl libOpenCL)
$(use_with openshmem shmem openshmem)
$(use_with pmi)
$(use_with unwind libunwind)
)
if use llvm; then
myconf+=( "--with-llvm=$(get_llvm_prefix)/bin" )
else
myconf+=( "--without-llvm" )
fi
use mpi || myconf+=( "--without-mpi" )
econf "${myconf[@]}"
}
src_install() {
default
find "${ED}" -name '*.la' -delete || die
}

38
sys-cluster/sionlib/sionlib-1.7.7-r4.ebuild
View File

@@ -8,7 +8,7 @@ DOCS_CONFIG_NAME="doxy"
FORTRAN_NEEDED="fortran"
PYTHON_COMPAT=( pypy3 python3_{8..11} )
inherit docs flag-o-matic fortran-2 python-any-r1 toolchain-funcs
inherit docs edo flag-o-matic fortran-2 python-any-r1 toolchain-funcs
DESCRIPTION="Scalable I/O library for parallel access to task-local files"
HOMEPAGE="https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html"
@@ -22,10 +22,6 @@ IUSE="+cxx debug deep-est-sdv doc examples +fortran hostname-regex +mpi +ompi +o
RDEPEND="
mpi? ( virtual/mpi )
ompi? (
|| ( sys-devel/gcc:*[openmp] sys-libs/libomp )
virtual/mpi
)
openmp? ( || ( sys-devel/gcc:*[openmp] sys-libs/libomp ) )
sionfwd? ( sys-cluster/SIONfwd )
"
@@ -34,7 +30,10 @@ DEPEND="
${PYTHON_DEPS}
"
REQUIRED_USE="?? ( hostname-regex deep-est-sdv )"
REQUIRED_USE="
ompi? ( mpi openmp )
?? ( hostname-regex deep-est-sdv )
"
PATCHES=(
"${FILESDIR}/${PN}-respect-flags-v3.patch"
"${FILESDIR}/${PN}-build-shared-libraries.patch"
@@ -43,7 +42,6 @@ PATCHES=(
pkg_setup() {
FORTRAN_NEED_OPENMP=0
use openmp && FORTRAN_NEED_OPENMP=1
use ompi && FORTRAN_NEED_OPENMP=1
fortran-2_pkg_setup
}
@@ -77,7 +75,11 @@ src_configure() {
#custom configure?
use cxx || myconf+=( "--disable-cxx" )
use fortran || myconf+=( "--disable-fortran" )
use mpi || myconf+=( "--disable-mpi" )
if use mpi; then
myconf+=( "--mpi=$(detect_mpi_implementation || die)" )
else
myconf+=( "--disable-mpi" )
fi
use ompi || myconf+=( "--disable-ompi" )
use openmp || myconf+=( "--disable-omp" )
use parutils || myconf+=( "--disable-parutils" )
@@ -126,3 +128,23 @@ src_install() {
find "${ED}" -name '*.la' -delete || die
}
detect_mpi_implementation() {
cat > testmpi.c <<- EOF
#include "mpi.h"
#include "stdio.h"
int main(){
#ifdef OPEN_MPI
printf("%s","openmpi");
#endif
#ifdef MPICH
printf("%s%i","mpich",MPICH_NAME);
#endif
return 0;
}
EOF
edo ${CC} testmpi.c -o testmpi
./testmpi || die
}

40
sys-cluster/sionlibl/sionlibl-1.7.7-r3.ebuild
View File

@@ -8,7 +8,7 @@ DOCS_CONFIG_NAME="doxy"
FORTRAN_NEEDED="fortran"
PYTHON_COMPAT=( pypy3 python3_{8..11} )
inherit docs flag-o-matic fortran-2 python-any-r1 toolchain-funcs
inherit docs edo flag-o-matic fortran-2 python-any-r1 toolchain-funcs
DESCRIPTION="Scalable I/O library for parallel access to task-local files"
HOMEPAGE="https://www.fz-juelich.de/ias/jsc/EN/Expertise/Support/Software/SIONlib/_node.html"
@@ -22,10 +22,6 @@ IUSE="+cxx debug deep-est-sdv doc examples +fortran hostname-regex +mpi +ompi +o
RDEPEND="
mpi? ( virtual/mpi )
ompi? (
|| ( sys-devel/gcc:*[openmp] sys-libs/libomp )
virtual/mpi
)
openmp? ( || ( sys-devel/gcc:*[openmp] sys-libs/libomp ) )
sionfwd? ( sys-cluster/SIONfwd )
"
@@ -34,7 +30,10 @@ DEPEND="
${PYTHON_DEPS}
"
REQUIRED_USE="?? ( hostname-regex deep-est-sdv )"
REQUIRED_USE="
ompi? ( mpi openmp )
?? ( hostname-regex deep-est-sdv )
"
PATCHES=(
"${FILESDIR}/${PN}-respect-flags-v3.patch"
"${FILESDIR}/${PN}-build-shared-libraries.patch"
@@ -43,7 +42,6 @@ PATCHES=(
pkg_setup() {
FORTRAN_NEED_OPENMP=0
use openmp && FORTRAN_NEED_OPENMP=1
use ompi && FORTRAN_NEED_OPENMP=1
fortran-2_pkg_setup
}
@@ -77,7 +75,11 @@ src_configure() {
#custom configure?
use cxx || myconf+=( "--disable-cxx" )
use fortran || myconf+=( "--disable-fortran" )
use mpi || myconf+=( "--disable-mpi" )
if use mpi; then
myconf+=( "--mpi=$(detect_mpi_implementation || die)" )
else
myconf+=( "--disable-mpi" )
fi
use ompi || myconf+=( "--disable-ompi" )
use openmp || myconf+=( "--disable-omp" )
use parutils || myconf+=( "--disable-parutils" )
@@ -85,7 +87,7 @@ src_configure() {
use python && myconf+=( "--enable-python=3" )
use sionfwd && myconf+=( "--enable-sionfwd=${EPREFIX}/usr" )
./configure "${myconf[@]}" || die
edo ./configure "${myconf[@]}"
}
src_compile() {
@@ -134,3 +136,23 @@ src_install() {
#find "${ED}" -name '*.a' -delete || die
find "${ED}" -name '*.la' -delete || die
}
detect_mpi_implementation() {
cat > testmpi.c <<- EOF
#include "mpi.h"
#include "stdio.h"
int main(){
#ifdef OPEN_MPI
printf("%s","openmpi");
#endif
#ifdef MPICH
printf("%s%i","mpich",MPICH_NAME);
#endif
return 0;
}
EOF
edo ${CC} testmpi.c -o testmpi
./testmpi || die
}

1
sys-kernel/uek-sources/Manifest
View File

@@ -8,3 +8,4 @@ DIST linux-uek-5.4.17-2136.305.5.tar.gz 175486059 BLAKE2B e51fd6ddc031f3a901ad5e
DIST linux-uek-5.4.17-2136.306.1.tar.gz 175487701 BLAKE2B 4ea72ec404ef2e88492f46feafdf052f9fff0efd16522f7fcb24c708141b21ab16b9919bd30399c15780126091e083b082a4d47fd5a1aa1743179ac8a11012e0 SHA512 d0fb863acde2fb680f78fb3eb855fa4a4e7bc54c1ea1b4003d3f7a33bffdfbdbfc28c7c3e650deae08a493a0fbda31b085b827ad6b40f5bb31724253925b6935
DIST linux-uek-5.4.17-2136.307.2.tar.gz 175498423 BLAKE2B f3e95673891cdf2750d0ff19205c8a0b265de4c171125e69eaf2ee85b72cabe23265de74759a691b824525221f3824b365a9dc67d03e281dc64eaae539903bde SHA512 2b692a5ed58afcf0f351216dee1dda92a8033002c373afd8ab8afcda19b1ca48b46b4cd34c8d299391e44fee57c13be3edaca19a398f6bf3505e37eb7d2e21b5
DIST linux-uek-5.4.17-2136.308.4.tar.gz 176328838 BLAKE2B 0c7187afad5cc21e86eef121fff81a94f13ddad98c1533ed9d1024a28aabcee95eadb403eba33733371e58a6f481ebb7cc42a03af124ab2517475a3d86f8e2ce SHA512 44ba9c17d930624eb502ecc66ecd6b48c3d3686284f45030522d816e26ad0f74c6f92437ba4d39c9c4335182ffec198791ddd7232b49e8de21620862b1cf5648
DIST linux-uek-5.4.17-2136.308.6.tar.gz 176312971 BLAKE2B bc39d9f6c743d7b025e085b8bb86b7c5c42dd29254961aa079f393367bd382c282ebd4c95ecc99624be2dde2721e08c551030fade4f96542c5a2270019d209a6 SHA512 46158400a97eb7b6d687f2814fb09d41415607bc698cf3b3407d226c8da95bd20d955bedbddba474167eb8409dc43616bbd367b5266bbe941960ea508c249285

67
sys-kernel/uek-sources/uek-sources-5.4.17.2136.308.6.ebuild Normal file
View File

@@ -0,0 +1,67 @@
# Copyright 2021-2022 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=7
KERNEL_VERSION=$(ver_cut 1-3)
KERNEL_TRUNK=$(ver_cut 1-2)
UEK_PATCH_VERSION=$(ver_cut 4-6)
UEK_VERSION="${KERNEL_VERSION}-${UEK_PATCH_VERSION}"
ETYPE="sources"
K_GENPATCHES_VER="192"
K_SECURITY_UNSUPPORTED="1"
CKV="${KERNEL_VERSION}_p${UEK_PATCH_VERSION}"
inherit kernel-2
detect_version
detect_arch
DESCRIPTION="Unbreakable Enterprise Kernel (UEK) sources built from Oracle"
HOMEPAGE="https://github.com/oracle/linux-uek"
SRC_URI="
https://github.com/oracle/linux-uek/archive/refs/tags/v${UEK_VERSION}.tar.gz
-> linux-uek-${UEK_VERSION}.tar.gz
https://dev.gentoo.org/~mpagano/genpatches/tarballs/genpatches-${KERNEL_TRUNK}-${K_GENPATCHES_VER}.base.tar.xz
https://dev.gentoo.org/~mpagano/genpatches/tarballs/genpatches-${KERNEL_TRUNK}-${K_GENPATCHES_VER}.experimental.tar.xz
https://dev.gentoo.org/~mpagano/genpatches/tarballs/genpatches-${KERNEL_TRUNK}-${K_GENPATCHES_VER}.extras.tar.xz
"
S="${WORKDIR}/linux-uek-${UEK_VERSION}"
LICENSE="GPL-2"
KEYWORDS="~amd64"
IUSE="+gentoo experimental"
PATCHES=(
"${FILESDIR}"/uek-sources-5.4.17.2136.303.1-ip6_sock_set_v6only.patch
"${FILESDIR}"/uek-sources-5.4.17.2136.303.2-O3.patch
)
src_unpack() {
default
# remove all backup files
find . -iname "*~" -print -exec rm {} \; 2>/dev/null
unpack_set_extraversion
unpack_fix_install_path
env_setup_xmakeopts
}
src_prepare() {
use gentoo && PATCHES+=(
"${WORKDIR}"/1500_XATTR_USER_PREFIX.patch
"${WORKDIR}"/1510_fs-enable-link-security-restrictions-by-default.patch
"${WORKDIR}"/2000_BT-Check-key-sizes-only-if-Secure-Simple-Pairing-enabled.patch
"${WORKDIR}"/2600_enable-key-swapping-for-apple-mac.patch
"${WORKDIR}"/2920_sign-file-patch-for-libressl.patch
"${WORKDIR}"/4567_distro-Gentoo-Kconfig.patch
)
use experimental && PATCHES+=(
"${WORKDIR}"/5000_shifts-ubuntu-20.04.patch
"${WORKDIR}"/5010_enable-cpu-optimizations-universal.patch
)
default
}