sci-libs/superlu_dist: unbundle colamd

Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com>

sci-libs/superlu_dist/Manifest

@@ -1,2 +1 @@
-DIST superlu_dist-7.2.0.tar.gz 2187572 BLAKE2B 93e848e7146022030d8d55fef74b090d6998553d5114b136c38fc95873941f5fe20a2a3f7af30cf4465fac4306da41dc41f27614397f77f9e08b57f8705c9312 SHA512 89d2480e2c200e4588171b24ce21c9f1556c3ba917a561bdb6ac89e88c73ea982ba133ffddba632494098b68d8ad59ca28ec215f2cb92da12c518e87a2e1d5f7
-DIST superlu_dist-8.0.0.tar.gz 2291245 BLAKE2B 059b737d9286fa43a5eee0f6b2719571c07f8176dce2055846646a37fedeff39816e673271f76fcedff739b766404aa3f74ce9bb02b7a51be043c449de578848 SHA512 c4e4df9b077bc24f587121c05c60a9521f9afe2f1a15acb2e1ea17b34df33c155a423f89c520c43f7953889a8ae90d8e358f95e99e901d3097e9df6a992c482e
+DIST superlu_dist-8.0.0_p20220526.tar.gz 2293227 BLAKE2B 5c73d68a1d9812063614fb503a99c5f1e141d7c4340c1b484e5c24b818c47a6ffc2073140fc585e11b3d5b342d0baa6299ebeface03e2d1eb30245043d214751 SHA512 ac5f03b7f2500f306277dabda9e1aea457b55f2d41b72b969fa4e3a986ebb6abb65f87a3678d6cc103faa8f8e720aaac2b79d9db150288bfe1385abe2b61d8ce

sci-libs/superlu_dist/files/superlu_dist-8.0.0_p20220526-system-colamd.patch

@@ -0,0 +1,27 @@
+--- /var/tmp/portage/sci-libs/superlu_dist-8.0.0_p20220526/work/superlu_dist-df1dbf3afd7876644ff5d0613dfa7b9d32af79de/SRC/CMakeLists.txt
++++ superlu_dist-df1dbf3afd7876644ff5d0613dfa7b9d32af79de/SRC/CMakeLists.txt
+@@ -7,7 +7,6 @@
+     superlu_enum_consts.h
+     supermatrix.h
+     util_dist.h
+-    colamd.h
+     gpu_api_utils.h
+     gpu_wrapper.h
+     ${CMAKE_CURRENT_BINARY_DIR}/superlu_dist_config.h
+@@ -40,7 +39,6 @@
+   xerr_dist.c
+   smach_dist.c
+   dmach_dist.c
+-  colamd.c
+   superlu_dist_version.c
+   comm_tree.c
+   superlu_grid3d.c    ## 3D code
+@@ -291,7 +289,7 @@
+ endif()
+ 
+ set(superlu_dist_libs ${MPI_C_LIBRARIES} ${MPI_CXX_LIBRARIES} ${BLAS_LIB} ${LAPACK_LIB}
+-    ${PARMETIS_LIB} ${COMBBLAS_LIB} ${CUDA_LIB} ${HIP_LIB}) 
++    ${PARMETIS_LIB} ${COMBBLAS_LIB} ${CUDA_LIB} ${HIP_LIB} -lcolamd) 
+ if (NOT MSVC)
+   list(APPEND superlu_dist_libs m)
+ endif ()

sci-libs/superlu_dist/superlu_dist-7.2.0.ebuild

@@ -1,79 +0,0 @@
-# Copyright 1999-2022 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DOCS_BUILDER="doxygen"
-DOCS_CONFIG_NAME="DoxyConfig"
-FORTRAN_NEEDED="fortran"
-
-inherit cmake docs fortran-2
-
-DESCRIPTION="MPI distributed sparse LU factorization library"
-HOMEPAGE="
-	https://portal.nersc.gov/project/sparse/superlu/
-	https://github.com/xiaoyeli/superlu_dist
-"
-SRC_URI="https://github.com/xiaoyeli/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="combblas +complex-precision +double-precision examples lapack fortran metis single-precision test"
-# TODO: cuda
-
-RDEPEND="
-	virtual/blas
-	virtual/mpi
-
-	combblas? ( sci-libs/CombBLAS )
-	lapack? ( virtual/lapack )
-	metis? ( sci-libs/parmetis )
-"
-DEPEND="${RDEPEND}"
-BDEPEND="virtual/pkgconfig"
-
-RESTRICT="!test? ( test )"
-
-src_prepare() {
-	rm -r CBLAS || die
-	cmake_src_prepare
-}
-
-src_configure() {
-	local mycmakeargs=(
-		-Denable_openmp=ON
-		-DBUILD_SHARED_LIBS=ON
-		-DBUILD_STATIC_LIBS=OFF
-		-DTPL_ENABLE_CUDALIB=OFF
-		-DTPL_ENABLE_INTERNAL_BLASLIB=OFF
-
-		-Denable_complex16=$(usex complex-precision)
-		-Denable_double=$(usex double-precision)
-		-Denable_examples=$(usex examples ON OFF)
-		-Denable_single=$(usex single-precision)
-		-Denable_tests=$(usex test ON OFF)
-		-DTPL_ENABLE_COMBBLASLIB=$(usex combblas)
-		-DTPL_ENABLE_LAPACKLIB=$(usex lapack)
-		-DTPL_ENABLE_PARMETISLIB=$(usex metis)
-		-DXSDK_ENABLE_Fortran=$(usex fortran)
-	)
-	if use combblas; then
-		mycmakeargs+=(
-			-DTPL_COMBBLAS_LIBRARIES="${EPREFIX}/usr/$(get_libdir)/libCombBLAS.so"
-			-DTPL_COMBBLAS_INCLUDE_DIRS="${EPREFIX}/usr/include/CombBLAS/"
-		)
-	fi
-	if use metis; then
-		mycmakeargs+=(
-			-DTPL_PARMETIS_LIBRARIES="${EPREFIX}/usr/$(get_libdir)/libparmetis.so"
-			-DTPL_PARMETIS_INCLUDE_DIRS="${EPREFIX}/usr/include"
-		)
-	fi
-	cmake_src_configure
-}
-
-src_compile() {
-	cmake_src_compile
-	default
-}

sci-libs/superlu_dist/superlu_dist-8.0.0_p20220526.ebuild

@@ -3,6 +3,7 @@
 
 EAPI=8
 
+COMMIT="df1dbf3afd7876644ff5d0613dfa7b9d32af79de"
 DOCS_BUILDER="doxygen"
 DOCS_CONFIG_NAME="DoxyConfig"
 FORTRAN_NEEDED="fortran"
@@ -14,7 +15,8 @@ HOMEPAGE="
 	https://portal.nersc.gov/project/sparse/superlu/
 	https://github.com/xiaoyeli/superlu_dist
 "
-SRC_URI="https://github.com/xiaoyeli/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
+SRC_URI="https://github.com/xiaoyeli/${PN}/archive/${COMMIT}.tar.gz -> ${PF}.tar.gz"
+S="${WORKDIR}/${PN}-${COMMIT}"
 
 LICENSE="BSD"
 SLOT="0"
@@ -23,6 +25,7 @@ IUSE="combblas +complex-precision +double-precision examples hip lapack fortran
 # TODO: cuda
 
 RDEPEND="
+	sci-libs/colamd
 	virtual/blas
 	virtual/mpi
 
@@ -38,10 +41,12 @@ RDEPEND="
 DEPEND="${RDEPEND}"
 BDEPEND="virtual/pkgconfig"
 
+PATCHES=( "${FILESDIR}/${P}-system-colamd.patch" )
 RESTRICT="!test? ( test )"
 
 src_prepare() {
 	rm -r CBLAS || die
+	rm SRC/colamd.{c,h} || die
 	cmake_src_prepare
 }
 
@@ -80,6 +85,9 @@ src_configure() {
 }
 
 src_compile() {
-	cmake_src_compile
-	default
+	if use fortran ; then
+		MAKEOPTS="-j1" cmake_src_compile
+	else
+		cmake_src_compile
+	fi
 }