sci-biology/cytoscape-bin: new package

Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>

sci-biology/cytoscape-bin/Manifest

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+DIST cytoscape-unix-3.10.1.tar.gz 344323313 BLAKE2B ffb27144b9c717762c4b96ea192cbde5a83e0e6264022e59f007a5989d0ba636959e459361ccc36a38ffc5615074e644daef5835cb56040e8f6072e279569c59 SHA512 4b37e72e339a60a5275ab31f112af5b042e190c26d6557c66e9ff5bc0aff547b481548c66696442ea5ef8df4bc3c191ef0f3f675060d033c2535ac954567218e

sci-biology/cytoscape-bin/cytoscape-bin-3.10.1.ebuild

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+# Copyright 1999-2009 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI="8"
+
+inherit desktop java-pkg-2
+
+DESCRIPTION="A visualization platform for molecular interaction networks"
+HOMEPAGE="http://www.cytoscape.org/"
+SRC_URI="https://github.com/cytoscape/cytoscape/releases/download/${PV}/cytoscape-unix-${PV}.tar.gz"
+
+LICENSE="LGPL-2.1"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+RDEPEND=">=virtual/jre-11-r2"
+
+S="${WORKDIR}"
+
+src_install() {
+	MY_PN="cytoscape"
+	MYW="${WORKDIR}/${MY_PN}-unix-${PV}"
+
+	insinto "/opt/${MY_PN}"
+	doins -r ${MYW}/apps
+	doins -r ${MYW}/framework
+	doins -r ${MYW}/sampleData
+
+	cd ${MYW}
+	sh gen_vmoptions.sh
+	doins Cytoscape.vmoptions
+	exeinto "/opt/${MY_PN}"
+	doexe "${MYW}/${MY_PN}.sh"
+	dosym "${EPREFIX}/opt/${MY_PN}/${MY_PN}.sh" "${EPREFIX}/opt/bin/${MY_PN}"
+
+	exeinto "/opt/${MY_PN}/framework/bin"
+	doexe framework/bin/karaf
+
+	newicon framework/cytoscape_logo_512.png cytoscape_logo.png
+	make_desktop_entry ${MY_PN} CytoScape cytoscape_logo Science
+}

sci-biology/cytoscape-bin/metadata.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>andres.becerra@gmail.com</email>
+		<name>Andrés Becerra Sandoval</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>>Gentoo Biology Project</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>proxy-maint@gentoo.org</email>
+		<name>Proxy Maintainers</name>
+	</maintainer>
+</pkgmetadata>