sci-biology/geneathome: update to new BOINC

Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>

sci-biology/geneathome/Manifest

@@ -1,2 +1 @@
-DIST boinc-7.16.16.tar.gz 49599131 BLAKE2B 819ab85c19a684144711f77e669b892aa73c006b81c1d7ef7adbd9d580e1e8473ae27b52dc17953ee677c70fc78ed15df936afd740e629715f30f2b81d84ea6f SHA512 dd7042e176d6506c70de7866556ae73b2f45734df92038086d5b0414751f3da08dc571c49f0c26d747d3fb2577674d3ff8cdec7d3563861eaaaa5af9c1db0a0e
 DIST geneathome-1.10.tar.gz 73686241 BLAKE2B 4a4e9930e3faeaf0b6d687d26adb3267af1a70096397e9e4001066a7029a854b95cd35b6779a0e6bcf6c9cb3ad662b5f9e6adf4ab9d608ed2d73c65d3dadc10b SHA512 c8c1bb65f0021d9c9d9f14375212c458694dbb21abbfa90f6b8fb958bc6d86a522bbe13846b5930f6df0a4e755256f2016c5edd4447ae147cb1381eccce06b9e

sci-biology/geneathome/files/makefile.patch

@@ -19,7 +19,7 @@
 -CXXFLAGS += $(CFLAGS) -std=gnu++11
 -LDFLAGS += $(ARCH) -L/usr/X11R6/lib -L. -static
 -LIBS ?= -static-libgcc -static-libstdc++ -pthread -Wl,-Bstatic -lbz2
-+CPPFLAGS += -I$(BOINC_DIR) -I$(BOINC_LIB_DIR) -I$(BOINC_API_DIR) -Isimd
++CPPFLAGS += -I$(BOINC_DIR) -Isimd
 +CXXFLAGS += -std=gnu++11
 +LIBS ?= -pthread -lbz2
  CXXSOURCES = BoincFile.cpp Graph.cpp boinc_functions.cpp utility.cpp pc.cpp main.cpp

sci-biology/geneathome/geneathome-1.10-r3.ebuild

@@ -3,13 +3,12 @@
 
 EAPI=8
 
-BOINC_SUBMODULE="samples/${PN}"
 BOINC_MASTER_URL="https://gene.disi.unitn.it/test/"
 BOINC_INVITATION_CODE="science@tn"
 BOINC_HELPTEXT=\
 "gene@home is a part of TN-Grid BOINC project."
 
-inherit boinc boinc-app toolchain-funcs
+inherit boinc-app edo toolchain-funcs
 
 MY_PN="pc-boinc"
 COMMIT="3186afba409a"
@@ -17,7 +16,7 @@ COMMIT="3186afba409a"
 DESCRIPTION="BOINC application for expanding Gene Regulatory Networks (GRN)"
 HOMEPAGE+=" https://bitbucket.org/francesco-asnicar/pc-boinc"
 SRC_URI="https://bitbucket.org/francesco-asnicar/${MY_PN}/get/${COMMIT}.tar.gz -> ${P}.tar.gz"
-BOINC_S="francesco-asnicar-${MY_PN}-${COMMIT}"
+S="${WORKDIR}/francesco-asnicar-${MY_PN}-${COMMIT}"
 
 LICENSE="sunpro public-domain"
 SLOT="0"
@@ -32,11 +31,8 @@ DOCS=( Readme.md )
 
 boinc-app_add_deps
 
-boinc_require_source 7.16.16
-boinc_enable_autotools
-
 src_prepare() {
-	boinc_src_prepare
+	default
 
 	# error: inlining failed in call to ‘always_inline’ ‘int fprintf(FILE*, const char*, ...)’: target specific option mismatch
 	sed  -i src/main.cpp \
@@ -46,12 +42,13 @@ src_prepare() {
 
 src_compile() {
 	tc-export CC CXX
-	emake -C src
+
+	emake -C src BOINC_DIR="${ESYSROOT}"/usr/include/boinc
 }
 
 src_test() {
-	bash ./test_run.sh || die
-	bash ./test_run2.sh || die
+	edo bash ./test_run.sh
+	edo bash ./test_run2.sh
 }
 
 src_install() {