sys-cluster/parallel-netcdf: initial import

Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com>

sys-cluster/parallel-netcdf/Manifest

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+DIST pnetcdf-1.12.2.tar.gz 2355892 BLAKE2B ea94d63caa8d42b727084be0580c43e0ac03325acafb046a057092b41880a875a1ca04d1b0183062aed3d7182103217c02165c0f65e722b50129931fb7c93e82 SHA512 b482eadb4955a312fab885aa89c08817c010ed6ff69dff3cfa9c530f1b645b788973029909a8f6fd428170103cfa0784e1bfe085a48d9bcd2446dbd0d40ed67d

sys-cluster/parallel-netcdf/metadata.xml

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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<description>comaintainers welcome</description>
+		<email>lssndrbarbieri@gmail.com</email>
+		<name>Alessandro Barbieri</name>
+	</maintainer>
+	<upstream>
+		<bugs-to>https://github.com/Parallel-NetCDF/PnetCDF/issues</bugs-to>
+		<remote-id type="github">Parallel-NetCDF/PnetCDF</remote-id>
+	</upstream>
+	<use>
+		<flag name="burst-buffering">Enable burst buffer driver support</flag>
+		<flag name="cxx">Turn on support for the C++ interface</flag>
+		<flag name="erange-fill">Disable use of fill value when out-of-range type conversion causes NC_ERANGE error</flag>
+		<flag name="fortran">Turn on support for the Fortran interface</flag>
+		<flag name="file-sync"> Disable MPI file sync if you know your file system can provide data consistency</flag>
+		<flag name="netcdf">Enable NetCDF-4 feature</flag>
+		<flag name="null-byte-header-padding">Enable check for null-byte header padding when reading files in classic formats</flag>
+		<flag name="relax-coord-bound">Use stricter rule for error NC_EINVALCOORDS to disallow coordinate start argument equal to dimension size when argument count is zero</flag>
+		<flag name="subfiling">Enable subfiling support</flag>
+		<flag name="threadsafe">Enable thread-safe capability</flag>
+	</use>
+</pkgmetadata>

sys-cluster/parallel-netcdf/parallel-netcdf-1.12.2.ebuild

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+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+FORTRAN_NEEDED=fortran
+MYP="pnetcdf-${PV}"
+
+inherit fortran-2
+
+DESCRIPTION="Parallel extension to netCDF"
+HOMEPAGE="
+	https://parallel-netcdf.github.io
+	http://cucis.ece.northwestern.edu/projects/PnetCDF
+	http://www-unix.mcs.anl.gov/parallel-netcdf
+"
+SRC_URI="http://cucis.ece.northwestern.edu/projects/PnetCDF/Release/${MYP}.tar.gz"
+S="${WORKDIR}/${MYP}"
+
+LICENSE="UCAR-Unidata"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE="burst-buffering +cxx debug doc +erange-fill +file-sync +fortran netcdf
+null-byte-header-padding +relax-coord-bound subfiling threadsafe"
+
+RDEPEND="
+	netcdf? ( sci-libs/netcdf[mpi] )
+	virtual/mpi
+"
+#	adios? ( sys-cluster/adios )
+DEPEND="${RDEPEND}"
+BDEPEND="doc? ( app-doc/doxygen )"
+
+pkg_setup() {
+	fortran-2_pkg_setup
+}
+
+src_configure() {
+	export MPIF77=/usr/bin/mpif77
+	export MPIF90=/usr/bin/mpif90
+
+	local myconf=(
+		--enable-shared
+		--with-mpi="${EPREFIX}/usr"
+
+		$(use_enable burst-buffering)
+		$(use_enable cxx)
+		$(use_enable debug)
+		$(use_enable doc doxygen)
+		$(use_enable erange-fill)
+		$(use_enable file-sync)
+		$(use_enable fortran)
+		$(use_enable netcdf netcdf4)
+		$(use_enable null-byte-header-padding)
+		$(use_enable relax-coord-bound)
+		$(use_enable subfiling)
+		$(use_enable threadsafe thread-safe)
+	)
+#		$(use_enable adios)
+#	if use adios; then
+#		myconf+=( "--with-adios=${EPREFIX}/usr" )
+#	else
+#		myconf+=( "--without-adios" )
+#	fi
+	if use netcdf; then
+		myconf+=( "--with-netcdf4=${EPREFIX}/usr" )
+	else
+		myconf+=( "--without-netcdf4" )
+	fi
+
+	econf "${myconf[@]}"
+}
+
+src_compile() {
+	emake
+}
+
+src_install() {
+	emake DESTDIR="${D}" install
+}