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Python 3.10 target is scheduled for removal in Gentoo: https://public-inbox.gentoo.org/gentoo-dev/e6ca9f1f4ababb79ab2a3d005c39b483c3ecef6e.camel@gentoo.org/ Sphinx 8.2.0 already dropped support for CPython 3.10 and PyPy 3.10, leading to multiple CI failures in ::guru. We can safely remove this target, because GURU is "experimental" and does not have stable keywords. Let's not remove "pypy3" right now because a) There are not many packages using it. b) So we can see which packages supported PyPy 3.10, and test them with PyPy 3.11. Closes: https://github.com/gentoo/guru/pull/291 Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
119 lines
2.6 KiB
Bash
119 lines
2.6 KiB
Bash
# Copyright 2021-2024 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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PYTHON_COMPAT=( python3_{11..12} )
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BOINC_APP_OPTIONAL=1
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inherit boinc-app flag-o-matic meson optfeature python-any-r1
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DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
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HOMEPAGE="https://gitlab.com/Jukic/cmdock"
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SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.bz2"
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S="${WORKDIR}/${PN}-v${PV}"
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LICENSE="LGPL-3 ZLIB"
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SLOT="0/${PV}"
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KEYWORDS="~amd64"
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IUSE="apidoc cpu_flags_x86_sse2 doc test"
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# Flaky tests
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RESTRICT="test"
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DEPEND="
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dev-cpp/eigen:3
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>=dev-cpp/indicators-2.3-r1
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>=dev-cpp/pcg-cpp-0.98.1_p20210406-r1
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>=dev-libs/cxxopts-3
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"
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BDEPEND="
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apidoc? (
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app-text/doxygen
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dev-texlive/texlive-fontutils
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)
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doc? (
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$(python_gen_any_dep '
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dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]
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dev-python/sphinx[${PYTHON_USEDEP}]
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')
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)
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test? ( ${PYTHON_DEPS} )
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"
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PATCHES=(
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"${FILESDIR}"/${P}-include.patch
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"${FILESDIR}"/${P}-cxxopts.patch
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)
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DOCS=( README.md changelog.md )
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BOINC_MASTER_URL="https://www.sidock.si/sidock/"
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BOINC_INVITATION_CODE="Crunch_4Science"
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BOINC_APP_HELPTEXT=\
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"The easiest way to do something useful with this application
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is to attach it to SiDock@home BOINC project."
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INSTALL_PREFIX="${EPREFIX}/opt/${P}"
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boinc-app_add_deps
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python_check_deps() {
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use doc || return 0
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python_has_version "dev-python/sphinx[${PYTHON_USEDEP}]" &&
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python_has_version "dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]"
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}
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foreach_wrapper_job() {
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sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die
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}
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src_prepare() {
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default
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python_fix_shebang "${S}"/bin
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}
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src_configure() {
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# very weird directory layout
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local emesonargs=(
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--prefix="${INSTALL_PREFIX:?}"
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$(meson_use apidoc)
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$(meson_use doc)
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$(meson_use test tests)
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-Ddocdir="${EPREFIX}"/usr/share/doc/${PF}
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)
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meson_src_configure
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use cpu_flags_x86_sse2 || append-cppflags "-DBUNDLE_NO_SSE"
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}
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src_install() {
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meson_src_install
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python_optimize "${D}${INSTALL_PREFIX:?}"/bin
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if use boinc; then
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boinc_install_appinfo "${FILESDIR}"/app_info_0.2.0-r1.xml
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boinc_install_wrapper cmdock-l_wrapper \
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"${FILESDIR}"/cmdock-l_job_0.2.0-r1.xml cmdock-l_job.xml
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# install cmdock executable
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exeinto "$(get_project_root)"
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exeopts --owner root --group boinc
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doexe "${D}${INSTALL_PREFIX:?}"/bin/cmdock
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# install a blank file
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insinto "$(get_project_root)"
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insopts -m 0644 --owner root --group boinc
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newins - docking_out
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fi
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}
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pkg_postinst() {
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optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy sci-chemistry/openbabel[python]"
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use boinc && boinc-app_pkg_postinst
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}
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pkg_postrm() {
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use boinc && boinc-app_pkg_postrm
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}
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