sys-cluster/scr: also link yogrt for serial library

Closes: https://bugs.gentoo.org/821457
Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com>

sys-cluster/scr/Manifest

@@ -1,2 +1 @@
 DIST scr-3.0.tar.gz 1235509 BLAKE2B 3a470c1f55d633993db6ca7c7980e6b8b34513370a8233202ac21d625f64c1630eafd6084735e81fe60e05f182b71114f51f8f4fe69df8cf609b1e6d6ded01f5 SHA512 168bffb7c0280094075879fa5c626dfc57f9004c9ebe09a97cf0d2b0e67c3979f31c7b39466586eb20562e6768ce576625a6d4d99f9ad9fe5ae02a82cfbc988f
-DIST scr-3.0_pre2.tar.gz 1231943 BLAKE2B a4d8e779edc4b48a5b13a0cff851496068076a8ae901f3c3d3ad2344708a0abc6b69ce71bd7313286a91844a87930e6fa5c097d1c5b15ebbc12247ba293f843f SHA512 7b90b14cfbb6fa3020b6c3c3a7f5568963374d9fe7ad0b6962632f776c3699d6c38fa04800736d423350190542896ca9240033dca1e820f7f698c336518c891a

sys-cluster/scr/files/scr-3.0-add-YOGRT_LIBRARIES-to-SCR_EXTERNAL_SERIAL_LIBS.patch

@@ -0,0 +1,15 @@
+From e842ed30c49d26cc818600fd794354103f99c5fe Mon Sep 17 00:00:00 2001
+From: Alessandro Barbieri <lssndrbarbieri@gmail.com>
+Date: Sat, 26 Mar 2022 10:10:01 +0100
+Subject: [PATCH] add YOGRT_LIBRARIES to SCR_EXTERNAL_SERIAL_LIBS
+
+--- a/cmake/SCR_DEPENDENCIES.cmake
++++ b/cmake/SCR_DEPENDENCIES.cmake
+@@ -46,6 +46,7 @@ IF(ENABLE_YOGRT)
+       SET(HAVE_LIBYOGRT TRUE)
+       INCLUDE_DIRECTORIES(${YOGRT_INCLUDE_DIRS})
+       LIST(APPEND SCR_EXTERNAL_LIBS ${YOGRT_LIBRARIES})
++      LIST(APPEND SCR_EXTERNAL_SERIAL_LIBS ${YOGRT_LIBRARIES})
+       LIST(APPEND SCR_LINK_LINE " -L${WITH_YOGRT_PREFIX}/lib -lyogrt")
+    ENDIF(YOGRT_FOUND)
+ ENDIF(ENABLE_YOGRT)

sys-cluster/scr/scr-3.0.ebuild

@@ -47,6 +47,7 @@ DEPEND="${RDEPEND}"
 PATCHES=(
 	"${FILESDIR}/${PN}-3.0_pre2-shared-libscr_base.patch"
 	"${FILESDIR}/${PN}-3.0_pre2-no-static.patch"
+	"${FILESDIR}/${P}-add-YOGRT_LIBRARIES-to-SCR_EXTERNAL_SERIAL_LIBS.patch"
 )
 REQUIRED_USE="
 	${PYTHON_REQUIRED_USE}

sys-cluster/scr/scr-3.0_pre2.ebuild

@@ -1,104 +0,0 @@
-# Copyright 1999-2021 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-DOCS_BUILDER="sphinx"
-DOCS_DIR="${S}/doc/rst"
-FORTRAN_NEEDED="fortran"
-MYPV="${PV/_pre/rc}"
-PYTHON_COMPAT=( python3_{8..10} pypy3 )
-
-inherit cmake python-single-r1 fortran-2 docs
-
-DESCRIPTION="Scalable Checkpoint / Restart Library"
-HOMEPAGE="
-	https://computing.llnl.gov/projects/scalable-checkpoint-restart-for-mpi
-	https://github.com/LLNL/scr
-"
-SRC_URI="https://github.com/LLNL/scr/archive/refs/tags/v${MYPV}.tar.gz -> ${P}.tar.gz"
-S="${WORKDIR}/${PN}-${MYPV}"
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64"
-IUSE="doc examples fcntl +flock +fortran mysql slurm syslog test txt-log +yogrt"
-
-RDEPEND="
-	${PYTHON_DEPS}
-
-	app-shells/pdsh
-	>=sys-cluster/AXL-0.5.0
-	sys-cluster/dtcmp
-	sys-cluster/er
-	sys-cluster/KVTree
-	sys-cluster/rankstr
-	sys-cluster/redset
-	sys-cluster/spath
-	sys-libs/zlib
-	virtual/mpi
-
-	mysql? ( dev-db/mysql-connector-c  )
-	slurm? ( sys-cluster/slurm )
-	yogrt? ( sys-cluster/libyogrt[slurm?] )
-"
-DEPEND="${RDEPEND}"
-
-PATCHES=(
-	"${FILESDIR}/${P}-shared-libscr_base.patch"
-	"${FILESDIR}/${P}-no-static.patch"
-)
-REQUIRED_USE="
-	${PYTHON_REQUIRED_USE}
-
-	?? ( fcntl flock )
-"
-RESTRICT="!test? ( test )"
-
-pkg_setup() {
-	fortran-2_pkg_setup
-}
-
-src_configure() {
-	local lock="NONE"
-	use fcntl && lock="FCNTL"
-	use flock && lock="FLOCK"
-
-	local log="0"
-	use syslog && log="1"
-	use txt-log && log="1"
-
-	local resman="NONE"
-	use slurm && resman="SLURM"
-
-	local mycmakeargs=(
-		-DBUILD_PDSH=OFF
-		-DBUILD_SHARED_LIBS=ON
-		-DENABLE_CRAY_DW=OFF
-		-DENABLE_IBM_BBAPI=OFF
-		-DENABLE_PDSH=ON
-		-DSCR_LINK_STATIC=OFF
-
-		-DSCR_FILE_LOCK="${lock}"
-		-DSCR_LOG_ENABLE="${log}"
-		-DSCR_RESOURCE_MANAGER="${resman}"
-
-		-DENABLE_EXAMPLES=$(usex examples)
-		-DENABLE_FORTRAN=$(usex fortran)
-		-DENABLE_TESTS=$(usex test)
-		-DENABLE_YOGRT=$(usex yogrt)
-		-DSCR_LOG_SYSLOG_ENABLE=$(usex syslog 0 1)
-		-DSCR_LOG_TXT_ENABLE=$(usex txt-log 0 1)
-	)
-	cmake_src_configure
-}
-
-src_compile() {
-	cmake_src_compile
-	docs_compile
-}
-
-src_install() {
-	cmake_src_install
-#	find "${ED}" -name '*.a' -delete || die
-}