diff --git a/dev-db/tdscpp/Manifest b/dev-db/tdscpp/Manifest
index 6b3401e77a..2436974beb 100644
--- a/dev-db/tdscpp/Manifest
+++ b/dev-db/tdscpp/Manifest
@@ -1 +1 @@
-DIST tdscpp-20240629.tar.gz 726330 BLAKE2B 61d3de2cf991d109cd58e3fc5cbdb2e5d5503fedba40431fff7eb01483e06e6d5ace737f650d44e1033f778cfcb893fd6f1f0506bc848ebebbb9e152332cc4ee SHA512 96ccfe86ecbe34fa7c55115d33ceb277c065f3ffef8600e1cf5df5daf458fedf35e994d3d335b5724436bf283622d32252616d4e9336fcf0123af5edb3f32bf1
+DIST tdscpp-20240707.tar.gz 728339 BLAKE2B 1a5cc1410b87872e59ca64a01900c1cdde550aadf12f7f4bc954b34d4bee9d266eb634e7e6cdc12281060baa8c7a267d2d8b9ba84e1d542ada23522fe71decf6 SHA512 62cab90e17394a5f1c4058bc3a606c1f9542fbad4a749032964ae76dfbcf903f7ff1b20a459c2b3d784c4abb31b5abe7e582b30eaebd83ac9887629221f4a694
diff --git a/dev-db/tdscpp/tdscpp-20240629.ebuild b/dev-db/tdscpp/tdscpp-20240707.ebuild
similarity index 100%
rename from dev-db/tdscpp/tdscpp-20240629.ebuild
rename to dev-db/tdscpp/tdscpp-20240707.ebuild
diff --git a/eclass/boinc-app.eclass b/eclass/boinc-app.eclass
index 540fc8ea0a..822c843974 100644
--- a/eclass/boinc-app.eclass
+++ b/eclass/boinc-app.eclass
@@ -22,10 +22,11 @@
 
 case ${EAPI} in
 	8) ;;
-	*) die "${ECLASS}: EAPI ${EAPI} unsupported."
+	*) die "${ECLASS}: EAPI ${EAPI:-0} unsupported"
 esac
 
 # @ECLASS_VARIABLE: BOINC_APP_OPTIONAL
+# @PRE_INHERIT
 # @DEFAULT_UNSET
 # @DESCRIPTION:
 # If set to a non-null value, BOINC part in the ebuild will be
@@ -34,10 +35,6 @@ esac
 # If you enable BOINC_APP_OPTIONAL, you have to call boinc-app
 # default phase functions and add dependencies manually.
 
-if [[ ! ${BOINC_APP_OPTIONAL} ]]; then
-	EXPORT_FUNCTIONS pkg_postinst pkg_postrm
-fi
-
 if [[ ! ${_BOINC_APP_ECLASS} ]]; then
 
 # @ECLASS_VARIABLE: BOINC_MASTER_URL
@@ -59,6 +56,7 @@ if [[ ! ${_BOINC_APP_ECLASS} ]]; then
 # it's published on project's website.
 
 # @ECLASS_VARIABLE: HOMEPAGE
+# @OUTPUT_VARIABLE
 # @DESCRIPTION:
 # This variable defines the HOMEPAGE for BOINC projects if BOINC_MASTER_URL
 # was set before inherit.
@@ -71,49 +69,52 @@ if [[ ! ${_BOINC_APP_ECLASS} ]]; then
 You have to attach to the corresponding project
 in order to use this application with BOINC.}
 
+# @ECLASS_VARIABLE: BOINC_RUNTIMEDIR
+# @USER_VARIABLE
+# @DEFAULT_UNSET
+# @DESCRIPTION:
+# Directory with BOINC runtime data.
+
 # @FUNCTION: boinc-app_add_deps
 # @USAGE: [--wrapper]
 # @DESCRIPTION:
-# Generate appropriate (R)DEPEND for wrapper-enabled or
+# Generate appropriate IUSE and (R)DEPEND for wrapper-enabled or
 # native application.
+#
+# If BOINC_APP_OPTIONAL is set to a non-null value, dependencies
+# will be added for "boinc" USE-flag.
 boinc-app_add_deps() {
 	debug-print-function ${FUNCNAME} "${@}"
 
-	if [[ $1 == "--wrapper" ]]; then
-		RDEPEND="sci-misc/boinc-wrapper"
+	local depend rdepend
+	if [[ ${1} == "--wrapper" ]]; then
+		rdepend="sci-misc/boinc-wrapper"
 	else
-		DEPEND="sci-misc/boinc"
-		RDEPEND="sci-misc/boinc"
+		depend="sci-misc/boinc"
+		rdepend="sci-misc/boinc"
 	fi
 
-	DEPEND="${DEPEND} acct-user/boinc"
-	RDEPEND="${RDEPEND} acct-user/boinc"
-}
+	depend+=" acct-user/boinc"
+	rdepend+=" acct-user/boinc"
 
-# @FUNCTION: boinc_master_url_check
-# @USAGE:
-# @DESCRIPTION:
-# Make sure BOINC_MASTER_URL has a value.
-boinc_master_url_check() {
-	debug-print-function ${FUNCNAME} "${@}"
-
-	[[ -n ${BOINC_MASTER_URL} ]] || \
-		die "BOINC_MASTER_URL is not set"
-	return 0
+	if [[ ${BOINC_APP_OPTIONAL} ]]; then
+		IUSE+=" boinc"
+		DEPEND+=" boinc? ( ${depend} )"
+		RDEPEND+=" boinc? ( ${rdepend} )"
+	else
+		DEPEND+=" ${depend}"
+		RDEPEND+=" ${rdepend}"
+	fi
 }
 
 # @FUNCTION: get_boincdir
-# @USAGE:
-# @RETURN: non-prefixed default BOINC runtime directory
+# @RETURN: non-prefixed BOINC runtime directory
 get_boincdir() {
-	debug-print-function ${FUNCNAME} "${@}"
-
-	echo /var/lib/boinc
+	echo "${BOINC_RUNTIMEDIR:-/var/lib/boinc}"
 }
 
 # @FUNCTION: get_project_dirname
 # @INTERNAL
-# @USAGE:
 # @RETURN: project's dirname, derived from BOINC_MASTER_URL
 # @DESCRIPTION:
 # Example:
@@ -124,9 +125,8 @@ get_boincdir() {
 # -> boinc.berkeley.edu_example
 # @CODE
 get_project_dirname() {
-	debug-print-function ${FUNCNAME} "${@}"
-
-	boinc_master_url_check
+	[[ ${BOINC_MASTER_URL} ]] || \
+		die "BOINC_MASTER_URL is not set"
 
 	local dirname
 	dirname=${BOINC_MASTER_URL#*://}	# strip http[s]://
@@ -137,16 +137,12 @@ get_project_dirname() {
 }
 
 # @FUNCTION: get_project_root
-# @USAGE:
 # @RETURN: non-prefixed directory where applications and files should be installed
 get_project_root() {
-	debug-print-function ${FUNCNAME} "${@}"
-
 	echo "$(get_boincdir)/projects/$(get_project_dirname)"
 }
 
 # @FUNCTION: _boinc-app_fix_permissions
-# @USAGE:
 # @INTERNAL
 # @DESCRIPTION:
 # Fix owner and permissions for the project root.
@@ -161,20 +157,23 @@ _boinc-app_fix_permissions() {
 }
 
 # @FUNCTION: boinc-app_appinfo_prepare
-# @USAGE: <writable app_info.xml>
+# @USAGE: <app_info>
 # @DESCRIPTION:
 # The default appinfo_prepare(). It replaces all occurences
 # of @PV@ with its corresponding value.
 boinc-app_appinfo_prepare() {
 	debug-print-function ${FUNCNAME} "${@}"
 
-	sed -i "$1" \
+	(( $# == 1 )) || \
+		die "${FUNCNAME} takes exactly one argument"
+
+	sed -i "${1:?}" \
 		-e "s:@PV@:${PV}:g" \
 		|| die "app_info.xml sed failed"
 }
 
-# @FUNCTION: doappinfo
-# @USAGE: <app_info.xml>
+# @FUNCTION: boinc_install_appinfo
+# @USAGE: <app_info>
 # @DESCRIPTION:
 # Installs given app_info.xml file to the project root.
 #
@@ -191,106 +190,124 @@ boinc-app_appinfo_prepare() {
 # }
 #
 # src_install() {
-# 	doappinfo "${FILESDIR}"/app_info_${PV}.xml
+# 	boinc_install_appinfo "${FILESDIR}"/app_info_1.0.xml
 #
 #	exeinto $(get_project_root)
 # 	exeopts -m 0755 --owner root --group boinc
-# 	newexe bin/${PN} example_app_v${PV}
+# 	newexe bin/${PN} example_app_v1.0
 # }
 # @CODE
-doappinfo() {
+boinc_install_appinfo() {
 	debug-print-function ${FUNCNAME} "${@}"
 
 	(( $# == 1 )) || \
 		die "${FUNCNAME} takes exactly one argument"
 
-	cp "$1" "${T}"/app_info.xml || die
+	cp "${1:?}" "${T:?}"/app_info.xml || die
 
 	if declare -f appinfo_prepare >/dev/null; then
-		appinfo_prepare "${T}"/app_info.xml
+		appinfo_prepare "${T:?}"/app_info.xml
 	else
-		boinc-app_appinfo_prepare "${T}"/app_info.xml
+		boinc-app_appinfo_prepare "${T:?}"/app_info.xml
 	fi
 
 	( # subshell to avoid pollution of calling environment
-		insinto $(get_project_root)
+		insinto "$(get_project_root)"
 		insopts -m 0644 --owner root --group boinc
-		doins "${T}"/app_info.xml
+		doins "${T:?}"/app_info.xml
 	) || die "failed to install app_info.xml"
 
 	_boinc-app_fix_permissions
 }
 
-# @FUNCTION: boinc-wrapper_foreach_wrapper_job
-# @USAGE: <job.xml>
+# @FUNCTION: doappinfo
+# @DEPRECATED: boinc_install_appinfo
+# @USAGE: <app_info>
+# @DESCRIPTION:
+# Installs given app_info.xml file to the project root.
+doappinfo() {
+	boinc_install_appinfo "${@}"
+}
+
+# @FUNCTION: boinc-app_foreach_wrapper_job
+# @USAGE: <job>
 # @DESCRIPTION:
 # The default foreach_wrapper_job(). It replaces all occurences
 # of @PV@, @EPREFIX@ and @LIBDIR@ strings with their corresponding values.
-boinc-wrapper_foreach_wrapper_job() {
+boinc-app_foreach_wrapper_job() {
 	debug-print-function ${FUNCNAME} "${@}"
 
-	sed -i "$1" \
+	(( $# == 1 )) || \
+		die "${FUNCNAME} takes exactly one argument"
+
+	sed -i "${1:?}" \
 		-e "s:@PV@:${PV}:g" \
 		-e "s:@EPREFIX@:${EPREFIX}:g" \
 		-e "s:@LIBDIR@:$(get_libdir):g" \
-		|| die "$(basename "$1") sed failed"
+		|| die "$(basename "${1}") sed failed"
 }
 
-# @FUNCTION: dowrapper
-# @USAGE: <app> [more apps...]
+# @FUNCTION: boinc_install_wrapper
+# @USAGE: <bin> <job> [new name]
 # @DESCRIPTION:
 # This function provides a uniform way to install wrapper applications
 # for BOINC projects. It makes symlinks to the BOINC wrapper and also
 # installs respective job.xml files.
 #
-# When sci-misc/boinc-example-1.0 calls `dowrapper boinc-example` it:
+# When `dowrapper boinc-example_wrapper A.xml B.xml` is called, it:
 #
-# 1. Installs boinc-example_job_1.0.xml from ebuild's files/ directory
-#    to project's root directory
+# 1. Installs A.xml in the project's root directory, renaming it to B.xml
 #
-# 2. Installs boinc-example_wrapper_1.0 symlink, which points
-#    to /usr/bin/boinc-wrapper, to project's root directory
+# 2. Installs boinc-example_wrapper symlink, which points
+#    to /usr/bin/boinc-wrapper, in the project's root directory
 #
 # Example:
 # @CODE
 # src_install() {
 # 	meson_src_install
 #
-# 	dowrapper boinc-example boinc-sample
-#	doappinfo "${FILESDIR}"/app_info_${PV}.xml
+# 	boinc_install_wrapper boinc-example_wrapper "${FILESDIR}"/job.xml
+#	boinc_install_appinfo "${FILESDIR}"/app_info_1.0.xml
 # }
 # @CODE
 #
 # Keep your job.xml files in sync with app_info.xml!
-dowrapper() {
+boinc_install_wrapper() {
 	debug-print-function ${FUNCNAME} "${@}"
 
-	for app in "$@"; do
-		local wrapperjob="${app}_job_${PV}.xml"
-		local wrapperexe="${app}_wrapper_${PV}"
+	(( $# >= 2 && $# <= 3 )) || \
+		die "${FUNCNAME} got wrong number of arguments"
 
-		[[ -f "${FILESDIR}/${wrapperjob}" ]] || \
-			die "${wrapperjob} not found in ebuild's files/ directory"
+	local exe="${1:?}"
+	local job="${2:?}"
+	local job_dest="${3:-$(basename "${job:?}")}"
 
-		cp "${FILESDIR}/${wrapperjob}" "${T}" || die
+	cp "${job:?}" "${T:?}/${job_dest:?}" || die
+	if declare -f foreach_wrapper_job >/dev/null; then
+		foreach_wrapper_job "${T:?}/${job_dest:?}"
+	else
+		boinc-app_foreach_wrapper_job "${T:?}/${job_dest:?}"
+	fi
 
-		if declare -f foreach_wrapper_job >/dev/null; then
-			foreach_wrapper_job "${T}/${wrapperjob}"
-		else
-			boinc-wrapper_foreach_wrapper_job "${T}/${wrapperjob}"
-		fi
-
-		( # subshell to avoid pollution of calling environment
-			insinto $(get_project_root)
-			insopts -m 0644 --owner root --group boinc
-			doins "${T}/${wrapperjob}"
-			dosym -r /usr/bin/boinc-wrapper "$(get_project_root)/${wrapperexe}"
-		) || die "failed to install '${app}' wrapper app"
-	done
+	( # subshell to avoid pollution of calling environment
+		insinto "$(get_project_root)"
+		insopts -m 0644 --owner root --group boinc
+		doins "${T:?}/${job_dest:?}"
+	) || die "failed to install ${exe:?} wrapper job"
+	rm -f "${T:?}/${job_dest:?}"
 
+	dosym -r /usr/bin/boinc-wrapper "$(get_project_root)/${exe:?}"
 	_boinc-app_fix_permissions
 }
 
+# @FUNCTION: dowrapper
+# @DEPRECATED: boinc_install_wrapper
+# @DESCRIPTION:
+# Install BOINC wrappers and job definitions.
+dowrapper() {
+	die "${FUNCNAME} has been removed, please use boinc_install_wrapper instead"
+}
+
 # @FUNCTION: boinc-app_pkg_postinst
 # @DESCRIPTION:
 # Display helpful instructions on how to make the BOINC client use installed
@@ -299,16 +316,13 @@ boinc-app_pkg_postinst() {
 	debug-print-function ${FUNCNAME} "${@}"
 
 	if [[ -f "${EROOT}/$(get_boincdir)/master_$(get_project_dirname).xml" ]]; then
-		if [[ -z ${REPLACING_VERSIONS} ]]; then
+		if [[ ! ${REPLACING_VERSIONS} ]]; then
 			# most likely replacing applications downloaded
 			# by the BOINC client from project's website
 			elog "Restart the BOINC daemon for changes to take place:"
 			elog "# rc-service boinc restart"
-			return
-		else
-			# applications are already in use
-			return
 		fi
+		return
 	fi
 
 	elog
@@ -319,10 +333,10 @@ boinc-app_pkg_postinst() {
 
 	if [[ ! ${BOINC_INVITATION_CODE} ]]; then
 		elog "# rc-service boinc attach"
-		elog "    Enter the Project URL: ${BOINC_MASTER_URL}"
+		elog "    Enter the Project URL: ${BOINC_MASTER_URL:?}"
 	else
-		elog "- Master URL: ${BOINC_MASTER_URL}"
-		elog "- Invitation code: ${BOINC_INVITATION_CODE}"
+		elog "- Master URL: ${BOINC_MASTER_URL:?}"
+		elog "- Invitation code: ${BOINC_INVITATION_CODE:?}"
 	fi
 }
 
@@ -333,20 +347,24 @@ boinc-app_pkg_postinst() {
 boinc-app_pkg_postrm() {
 	debug-print-function ${FUNCNAME} "${@}"
 
-	if [[ -z ${REPLACED_BY_VERSION} ]]; then
+	if [[ ! ${REPLACED_BY_VERSION} ]]; then
 		local gui_rpc_auth="$(get_boincdir)/gui_rpc_auth.cfg"
 		local passwd=$(cat "${EROOT}/${gui_rpc_auth}" 2>/dev/null)
-		if [[ -z ${passwd} ]]; then
-			passwd="\$(cat ${gui_rpc_auth})"
+		if [[ ! ${passwd?} ]]; then
+			passwd="\$(cat ${gui_rpc_auth:?})"
 		fi
 
 		elog "You should detach this project from the BOINC client"
 		elog "to stop current tasks and delete remaining project files:"
 		elog
-		elog "$ boinccmd --passwd ${passwd} --project ${BOINC_MASTER_URL} detach"
+		elog "$ boinccmd --passwd ${passwd:?} --project ${BOINC_MASTER_URL:?} detach"
 		elog
 	fi
 }
 
 _BOINC_APP_ECLASS=1
 fi
+
+if [[ ! ${BOINC_APP_OPTIONAL} ]]; then
+	EXPORT_FUNCTIONS pkg_postinst pkg_postrm
+fi
diff --git a/sci-biology/cmdock/cmdock-0.2.0-r1.ebuild b/sci-biology/cmdock/cmdock-0.2.0-r2.ebuild
similarity index 83%
rename from sci-biology/cmdock/cmdock-0.2.0-r1.ebuild
rename to sci-biology/cmdock/cmdock-0.2.0-r2.ebuild
index f46747447a..55e83bffb6 100644
--- a/sci-biology/cmdock/cmdock-0.2.0-r1.ebuild
+++ b/sci-biology/cmdock/cmdock-0.2.0-r2.ebuild
@@ -4,7 +4,7 @@
 EAPI=8
 
 PYTHON_COMPAT=( python3_{10..12} )
-BOINC_APP_OPTIONAL="true"
+BOINC_APP_OPTIONAL=1
 inherit boinc-app flag-o-matic meson optfeature python-any-r1
 
 DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
@@ -15,14 +15,11 @@ S="${WORKDIR}/${PN}-v${PV}"
 LICENSE="LGPL-3 ZLIB"
 SLOT="0/${PV}"
 KEYWORDS="~amd64"
-IUSE="apidoc boinc cpu_flags_x86_sse2 doc test"
+IUSE="apidoc cpu_flags_x86_sse2 doc test"
 
 # Flaky tests
 RESTRICT="test"
 
-RDEPEND="
-	boinc? ( sci-misc/boinc-wrapper )
-"
 DEPEND="
 	dev-cpp/eigen:3
 	>=dev-cpp/indicators-2.3-r1
@@ -58,6 +55,8 @@ is to attach it to SiDock@home BOINC project."
 
 INSTALL_PREFIX="${EPREFIX}/opt/${P}"
 
+boinc-app_add_deps
+
 python_check_deps() {
 	use doc || return 0
 
@@ -77,7 +76,7 @@ src_prepare() {
 src_configure() {
 	# very weird directory layout
 	local emesonargs=(
-		--prefix="${INSTALL_PREFIX}"
+		--prefix="${INSTALL_PREFIX:?}"
 		$(meson_use apidoc)
 		$(meson_use doc)
 		$(meson_use test tests)
@@ -90,22 +89,22 @@ src_configure() {
 
 src_install() {
 	meson_src_install
-	python_optimize "${D}${INSTALL_PREFIX}"/bin
+	python_optimize "${D}${INSTALL_PREFIX:?}"/bin
 
 	if use boinc; then
-		doappinfo "${FILESDIR}"/app_info_${PV}.xml
-		dowrapper cmdock-l
+		boinc_install_appinfo "${FILESDIR}"/app_info_0.2.0-r1.xml
+		boinc_install_wrapper cmdock-l_wrapper \
+			"${FILESDIR}"/cmdock-l_job_0.2.0-r1.xml cmdock-l_job.xml
 
 		# install cmdock executable
 		exeinto "$(get_project_root)"
 		exeopts --owner root --group boinc
-		newexe "${D}${INSTALL_PREFIX}"/bin/cmdock cmdock-${PV}
+		doexe "${D}${INSTALL_PREFIX:?}"/bin/cmdock
 
 		# install a blank file
-		touch "${T}"/docking_out || die
 		insinto "$(get_project_root)"
-		insopts --owner root --group boinc
-		doins "${T}"/docking_out
+		insopts -m 0644 --owner root --group boinc
+		newins - docking_out
 	fi
 }
 
diff --git a/sci-biology/cmdock/cmdock-0.2.0.ebuild b/sci-biology/cmdock/cmdock-0.2.0.ebuild
deleted file mode 100644
index 3d1c2f0359..0000000000
--- a/sci-biology/cmdock/cmdock-0.2.0.ebuild
+++ /dev/null
@@ -1,112 +0,0 @@
-# Copyright 2021-2024 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=8
-
-PYTHON_COMPAT=( python3_{10..12} )
-BOINC_APP_OPTIONAL="true"
-inherit boinc-app flag-o-matic meson optfeature python-any-r1
-
-DESCRIPTION="Program for docking ligands to proteins and nucleic acids"
-HOMEPAGE="https://gitlab.com/Jukic/cmdock"
-SRC_URI="https://gitlab.com/Jukic/${PN}/-/archive/v${PV}/${PN}-v${PV}.tar.bz2"
-S="${WORKDIR}/${PN}-v${PV}"
-
-LICENSE="LGPL-3 ZLIB"
-SLOT="0/${PV}"
-KEYWORDS="~amd64"
-IUSE="apidoc boinc cpu_flags_x86_sse2 doc test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="
-	boinc? ( sci-misc/boinc-wrapper )
-"
-DEPEND="
-	dev-cpp/eigen:3
-	dev-cpp/indicators
-	>=dev-cpp/pcg-cpp-0.98.1_p20210406-r1
-	dev-libs/cxxopts
-"
-BDEPEND="
-	apidoc? (
-		app-text/doxygen
-		dev-texlive/texlive-fontutils
-	)
-	doc? (
-		$(python_gen_any_dep '
-			dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]
-			dev-python/sphinx[${PYTHON_USEDEP}]
-		')
-	)
-	test? ( ${PYTHON_DEPS} )
-"
-
-DOCS=( README.md changelog.md )
-
-BOINC_MASTER_URL="https://www.sidock.si/sidock/"
-BOINC_INVITATION_CODE="Crunch_4Science"
-BOINC_APP_HELPTEXT=\
-"The easiest way to do something useful with this application
-is to attach it to SiDock@home BOINC project."
-
-INSTALL_PREFIX="${EPREFIX}/opt/${P}"
-
-python_check_deps() {
-	use doc || return 0
-
-	python_has_version "dev-python/sphinx[${PYTHON_USEDEP}]" &&
-	python_has_version "dev-python/insipid-sphinx-theme[${PYTHON_USEDEP}]"
-}
-
-foreach_wrapper_job() {
-	sed -e "s:@PREFIX@:${INSTALL_PREFIX}:g" -i "${1}" || die
-}
-
-src_prepare() {
-	default
-	python_fix_shebang "${S}"/bin
-}
-
-src_configure() {
-	# very weird directory layout
-	local emesonargs=(
-		--prefix="${INSTALL_PREFIX}"
-		$(meson_use apidoc)
-		$(meson_use doc)
-		$(meson_use test tests)
-		-Ddocdir="${EPREFIX}"/usr/share/doc/${PF}
-	)
-	meson_src_configure
-
-	use cpu_flags_x86_sse2 || append-cppflags "-DBUNDLE_NO_SSE"
-}
-
-src_install() {
-	meson_src_install
-	python_optimize "${D}${INSTALL_PREFIX}"/bin
-
-	if use boinc; then
-		doappinfo "${FILESDIR}"/app_info_${PV}.xml
-		dowrapper cmdock-l
-
-		# install cmdock executable
-		exeinto "$(get_project_root)"
-		exeopts --owner root --group boinc
-		newexe "${D}${INSTALL_PREFIX}"/bin/cmdock cmdock-${PV}
-
-		# install a blank file
-		touch "${T}"/docking_out || die
-		insinto "$(get_project_root)"
-		insopts --owner root --group boinc
-		doins "${T}"/docking_out
-	fi
-}
-
-pkg_postinst() {
-	optfeature "sdtether.py and sdrmsd.py scripts" "dev-python/numpy sci-chemistry/openbabel[python]"
-	use boinc && boinc-app_pkg_postinst
-}
-
-pkg_postrm() {
-	use boinc && boinc-app_pkg_postrm
-}
diff --git a/sci-biology/cmdock/files/app_info_0.2.0.xml b/sci-biology/cmdock/files/app_info_0.2.0-r1.xml
similarity index 68%
rename from sci-biology/cmdock/files/app_info_0.2.0.xml
rename to sci-biology/cmdock/files/app_info_0.2.0-r1.xml
index ad23f78901..b9eb040fbd 100644
--- a/sci-biology/cmdock/files/app_info_0.2.0.xml
+++ b/sci-biology/cmdock/files/app_info_0.2.0-r1.xml
@@ -1,22 +1,22 @@
 <app_info>
 <app>
 	<name>cmdock-l</name>
-	<user_friendly_name>CurieMarieDock 0.2.0 long tasks</user_friendly_name>
+	<user_friendly_name>CurieMarieDock @PV@ long tasks</user_friendly_name>
 </app>
 
 <file_info>
-	<name>cmdock-l_wrapper_@PV@</name>
+	<name>cmdock-l_wrapper</name>
 	<sticky/>
 	<executable/>
 </file_info>
 <file_info>
-	<name>cmdock-@PV@</name>
+	<name>cmdock</name>
 	<sticky/>
 	<executable/>
 </file_info>
 
 <file_info>
-	<name>cmdock-l_job_@PV@.xml</name>
+	<name>cmdock-l_job.xml</name>
 	<sticky/>
 </file_info>
 <file_info>
@@ -28,16 +28,16 @@
 	<app_name>cmdock-l</app_name>
 	<version_num>100</version_num>
 	<file_ref>
-		<file_name>cmdock-l_wrapper_@PV@</file_name>
+		<file_name>cmdock-l_wrapper</file_name>
 		<main_program/>
 	</file_ref>
 	<file_ref>
-		<file_name>cmdock-@PV@</file_name>
+		<file_name>cmdock</file_name>
 		<open_name>cmdock</open_name>
 		<copy_file/>
 	</file_ref>
 	<file_ref>
-		<file_name>cmdock-l_job_@PV@.xml</file_name>
+		<file_name>cmdock-l_job.xml</file_name>
 		<open_name>job.xml</open_name>
 		<copy_file/>
 	</file_ref>
diff --git a/sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml b/sci-biology/cmdock/files/cmdock-l_job_0.2.0-r1.xml
similarity index 77%
rename from sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml
rename to sci-biology/cmdock/files/cmdock-l_job_0.2.0-r1.xml
index a163eb29cf..6d626fb826 100644
--- a/sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml
+++ b/sci-biology/cmdock/files/cmdock-l_job_0.2.0-r1.xml
@@ -2,7 +2,7 @@
 	<task>
 		<application>cmdock</application>
 		<stdout_filename>docking_log</stdout_filename>
-		<command_line>-c -j 1 -b 1 -x -r target.prm -p "@PREFIX@/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
+		<command_line>-c -j 1 -b 1 -r target.prm -p "@PREFIX@/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
 		<checkpoint_filename>docking_out.chk</checkpoint_filename>
 		<fraction_done_filename>docking_out.progress</fraction_done_filename>
 		<setenv>CMDOCK_ROOT=@PREFIX@</setenv>
diff --git a/sec-keys/openpgp-keys-emersion/Manifest b/sec-keys/openpgp-keys-emersion/Manifest
index 7090b4f883..422f34ba88 100644
--- a/sec-keys/openpgp-keys-emersion/Manifest
+++ b/sec-keys/openpgp-keys-emersion/Manifest
@@ -1 +1 @@
-DIST openpgp-keys-emersion-20230421.asc 2263 BLAKE2B 03d35a3daa24b811de36e34f5c7bf082b8a49438acd33080ce2f01d8db7b0e0cdbd03d254ebb0ca8b1608815092a6e6e42fe7b5cbdecfa6f310e9f8608f04d6f SHA512 5681bac74f6e7e34230ad9a0127161872eb77a237ac5534127467046d90bdff1abe96d269ca4f8ff8c076ccbb88a4e71feb1525196f9df19a03efe05a69cea6f
+DIST openpgp-keys-emersion-20240714.asc 2263 BLAKE2B 2cee5af46ddfd374b94368c805f7a663015ebc90501f1ecb21e548ec209156ff658f6f8ad97eb0415fe74b6c0e30dd232872bfca28b5002ce130cdf590742550 SHA512 0033b669a58a63c256aa641178b9cbbbeef5bd8a017f0080f2a07c3fb393273e151931378b33724428491f7c537b26026781abede72d225a7d95e6b48bbd2dc5
diff --git a/sec-keys/openpgp-keys-emersion/openpgp-keys-emersion-20230421.ebuild b/sec-keys/openpgp-keys-emersion/openpgp-keys-emersion-20240714.ebuild
similarity index 93%
rename from sec-keys/openpgp-keys-emersion/openpgp-keys-emersion-20230421.ebuild
rename to sec-keys/openpgp-keys-emersion/openpgp-keys-emersion-20240714.ebuild
index 4d82653071..2f09a4af18 100644
--- a/sec-keys/openpgp-keys-emersion/openpgp-keys-emersion-20230421.ebuild
+++ b/sec-keys/openpgp-keys-emersion/openpgp-keys-emersion-20240714.ebuild
@@ -1,4 +1,4 @@
-# Copyright 2022 Gentoo Authors
+# Copyright 2022-2024 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=8