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sys-cluster/Graph500: new package, add 1.2
Signed-off-by: Alessandro Barbieri <lssndrbarbieri@gmail.com>
This commit is contained in:
Alessandro Barbieri
57
sys-cluster/Graph500/Graph500-1.2.ebuild
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57
sys-cluster/Graph500/Graph500-1.2.ebuild
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# Copyright 1999-2022 Gentoo Authors
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# Distributed under the terms of the GNU General Public License v2
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EAPI=8
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inherit cmake
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MYPN="${PN,,}"
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MYP="${MYPN}-${PV}"
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DESCRIPTION="Graph500 reference implementations"
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HOMEPAGE="https://github.com/Graph500/graph500"
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SRC_URI="https://github.com/${PN}/${PN}/archive/refs/tags/${MYP}.tar.gz"
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S="${WORKDIR}/${MYPN}-${MYP}"
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KEYWORDS="~amd64"
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LICENSE="MIT Boost-1.0"
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SLOT="0"
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IUSE="mpi openmp"
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RDEPEND="
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sys-libs/binutils-libs
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mpi? ( virtual/mpi )
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"
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DEPEND="${RDEPEND}"
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BDEPEND="app-admin/chrpath"
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PATCHES=(
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"${FILESDIR}/${P}-MPI_Type_create_struct.patch"
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"${FILESDIR}/${P}-static-inline.patch"
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)
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src_prepare() {
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cp "${FILESDIR}/${P}-CMakeLists.txt" CMakeLists.txt || die
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cmake_src_prepare
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}
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src_configure() {
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local mycmakeargs=(
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-DBUILD_MPI=$(usex mpi)
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-DBUILD_OPENMP=$(usex openmp)
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)
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cmake_src_configure
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}
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src_install() {
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cmake_src_install
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dosym ./libgenerator-seq.so "/usr/$(get_libdir)/libGraphGenlib.so"
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dodoc README Graph500.org
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insinto "/usr/share/doc/${PF}/html"
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doins *.html
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insinto "/usr/share/octave/site/m/${PN}"
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doins -r octave/*
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chrpath -d "${ED}/usr/bin/graph500_mpi_one_sided" || die
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chrpath -d "${ED}/usr/bin/graph500_mpi_simple" || die
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chrpath -d "${ED}/usr/bin/generator_test_mpi" || die
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}
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1
sys-cluster/Graph500/Manifest
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1
sys-cluster/Graph500/Manifest
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DIST graph500-1.2.tar.gz 368889 BLAKE2B f0afe4b89edab710b4c0149d5e726ba5758d2cc1852a8837ee7ffbc87dae23ce212b39b27e2301908f652c5dc7ea07525125decdb559e6585df4a80e68ff0686 SHA512 f62d5f4c1144234baf619a7e3f05eed5bfc2c6b7c9b8bd317cceb9652fbdba057976cb83d06e58d8290fe8caf79b113d5ab8ba9122d79f71c12e04af410b3afc
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135
sys-cluster/Graph500/files/Graph500-1.2-CMakeLists.txt
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135
sys-cluster/Graph500/files/Graph500-1.2-CMakeLists.txt
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cmake_minimum_required(VERSION 3.15)
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project(graph500 LANGUAGES C)
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set(CMAKE_POSITION_INDEPENDENT_CODE ON)
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include(GNUInstallDirs)
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SET(GRAPH500_SOURCES
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"${CMAKE_CURRENT_SOURCE_DIR}/options.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/rmat.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/kronecker.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/verify.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/prng.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/xalloc.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/timer.c"
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)
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ADD_LIBRARY(GRAPH500_OBJECTS OBJECT ${GRAPH500_SOURCES})
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target_include_directories(GRAPH500_OBJECTS PUBLIC "${CMAKE_CURRENT_SOURCE_DIR}")
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SET(GENERATOR_SRC
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/btrd_binomial_distribution.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/splittable_mrg.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/mrg_transitions.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/graph_generator.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/permutation_gen.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/make_graph.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/utils.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/scramble_edges.c"
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)
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ADD_LIBRARY(generator-seq SHARED ${GENERATOR_SRC} $<TARGET_OBJECTS:GRAPH500_OBJECTS>)
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target_compile_definitions(generator-seq PUBLIC GRAPH_GENERATOR_SEQ)
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target_include_directories(generator-seq PUBLIC "${CMAKE_CURRENT_SOURCE_DIR}/generator")
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target_link_libraries(generator-seq PUBLIC -liberty)
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install(TARGETS generator-seq LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}")
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if(BUILD_OPENMP)
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find_package(OpenMP REQUIRED)
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ADD_LIBRARY(generator-omp SHARED ${GENERATOR_SRC} $<TARGET_OBJECTS:GRAPH500_OBJECTS>)
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set_target_properties(generator-omp PROPERTIES COMPILE_FLAGS "-fopenmp")
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target_compile_definitions(generator-omp PUBLIC GRAPH_GENERATOR_OMP)
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target_include_directories(generator-omp PUBLIC "${CMAKE_CURRENT_SOURCE_DIR}/generator")
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target_link_libraries(generator-omp PUBLIC OpenMP::OpenMP_C -liberty)
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install(TARGETS generator-omp LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}")
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ADD_EXECUTABLE(omp-csr
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"${CMAKE_CURRENT_SOURCE_DIR}/omp-csr/omp-csr.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/graph500.c"
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)
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target_link_libraries(omp-csr generator-omp -lm)
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install(TARGETS omp-csr RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}")
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ADD_EXECUTABLE(generator_test_omp "${CMAKE_CURRENT_SOURCE_DIR}/generator/generator_test_omp.c")
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target_link_libraries(generator_test_omp generator-omp -lm)
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install(TARGETS generator_test_omp RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}")
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endif()
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ADD_EXECUTABLE(seq-list
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"${CMAKE_CURRENT_SOURCE_DIR}/seq-list/seq-list.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/graph500.c"
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)
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target_link_libraries(seq-list generator-seq -lm)
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install(TARGETS seq-list RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}")
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ADD_EXECUTABLE(seq-csr
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"${CMAKE_CURRENT_SOURCE_DIR}/seq-csr/seq-csr.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/graph500.c"
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)
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target_link_libraries(seq-csr generator-seq -lm)
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install(TARGETS seq-csr RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}")
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ADD_EXECUTABLE(generator_test_seq "${CMAKE_CURRENT_SOURCE_DIR}/generator/generator_test_seq.c")
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target_link_libraries(generator_test_seq generator-seq -lm)
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install(TARGETS generator_test_seq RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}")
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if(BUILD_MPI)
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find_package(MPI REQUIRED)
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ADD_LIBRARY(graph_generator_mpi SHARED
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"${CMAKE_CURRENT_SOURCE_DIR}/generator/apply_permutation_mpi.c"
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${GENERATOR_SRC}
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)
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target_compile_definitions(graph_generator_mpi PUBLIC restrict=__restrict__ GRAPH_GENERATOR_MPI GRAPHGEN_DISTRIBUTED_MEMORY)
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target_include_directories(graph_generator_mpi
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PUBLIC
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"${CMAKE_CURRENT_SOURCE_DIR}/generator"
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PRIVATE
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${MPI_INCLUDE_PATH}
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)
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target_link_libraries(graph_generator_mpi PUBLIC ${MPI_LIBRARIES} ${MPI_LINK_FLAGS} -liberty)
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install(TARGETS graph_generator_mpi LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}")
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ADD_EXECUTABLE(generator_test_mpi "${CMAKE_CURRENT_SOURCE_DIR}/generator/generator_test_mpi.c")
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target_compile_definitions(graph_generator_mpi PUBLIC restrict=__restrict__ GRAPH_GENERATOR_MPI GRAPHGEN_DISTRIBUTED_MEMORY)
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target_include_directories(generator_test_mpi
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PUBLIC
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"${CMAKE_CURRENT_SOURCE_DIR}/generator"
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PRIVATE
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${MPI_INCLUDE_PATH}
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)
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target_link_libraries(generator_test_mpi graph_generator_mpi ${MPI_LIBRARIES} ${MPI_LINK_FLAGS} -lm)
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install(TARGETS generator_test_mpi RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}")
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SET(graph500_mpi_src
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"${CMAKE_CURRENT_SOURCE_DIR}/mpi/convert_to_csr.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/mpi/find_roots.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/mpi/utils.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/mpi/validate.c"
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)
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ADD_LIBRARY(graph500_mpi_obj OBJECT ${graph500_mpi_src})
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target_include_directories(graph500_mpi_obj PUBLIC "${CMAKE_CURRENT_SOURCE_DIR}/mpi")
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target_compile_definitions(graph500_mpi_obj PUBLIC restrict=__restrict__ GRAPH_GENERATOR_MPI GRAPHGEN_DISTRIBUTED_MEMORY)
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ADD_LIBRARY(graph500_mpi SHARED $<TARGET_OBJECTS:graph500_mpi_obj>)
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install(TARGETS graph500_mpi LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}")
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ADD_EXECUTABLE(graph500_mpi_simple
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"${CMAKE_CURRENT_SOURCE_DIR}/mpi/main.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/mpi/bfs_simple.c"
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)
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target_compile_definitions(graph500_mpi_simple PUBLIC restrict=__restrict__ GRAPH_GENERATOR_MPI GRAPHGEN_DISTRIBUTED_MEMORY)
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target_link_libraries(graph500_mpi_simple graph500_mpi graph_generator_mpi -lm)
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install(TARGETS graph500_mpi_simple RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}")
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ADD_EXECUTABLE(graph500_mpi_one_sided
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"${CMAKE_CURRENT_SOURCE_DIR}/mpi/main.c"
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"${CMAKE_CURRENT_SOURCE_DIR}/mpi/bfs_one_sided.c"
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)
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target_compile_definitions(graph500_mpi_simple PUBLIC restrict=__restrict__ GRAPH_GENERATOR_MPI GRAPHGEN_DISTRIBUTED_MEMORY)
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target_link_libraries(graph500_mpi_one_sided graph500_mpi graph_generator_mpi -lm)
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install(TARGETS graph500_mpi_one_sided RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}")
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endif()
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install(DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/" DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/graph500" FILES_MATCHING PATTERN "*.h")
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install(DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/mpi/" DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/graph500/mpi" FILES_MATCHING PATTERN "*.h")
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install(DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/generator/" DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}/graph500/generator" FILES_MATCHING PATTERN "*.h")
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@@ -0,0 +1,11 @@
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--- a/generator/permutation_gen.c
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+++ b/generator/permutation_gen.c
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@@ -251,7 +251,7 @@
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indices[0] -= temp_base;
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indices[1] -= temp_base;
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MPI_Datatype old_types[] = {INT64_T_MPI_TYPE, INT64_T_MPI_TYPE};
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- MPI_Type_struct(2, blocklens, indices, old_types, &slot_data_type);
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+ MPI_Type_create_struct(2, blocklens, indices, old_types, &slot_data_type);
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MPI_Type_commit(&slot_data_type);
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}
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11
sys-cluster/Graph500/files/Graph500-1.2-static-inline.patch
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11
sys-cluster/Graph500/files/Graph500-1.2-static-inline.patch
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--- a/generator/generator_test_seq.c
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+++ b/generator/generator_test_seq.c
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@@ -20,7 +20,7 @@
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#include "make_graph.h"
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-inline double get_time() {
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+static inline double get_time() {
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struct timeval tv;
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gettimeofday(&tv, NULL);
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return tv.tv_sec + tv.tv_usec * 1.e-6;
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12
sys-cluster/Graph500/metadata.xml
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12
sys-cluster/Graph500/metadata.xml
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<?xml version="1.0" encoding="UTF-8"?>
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
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<pkgmetadata>
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<maintainer type="person">
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<email>lssndrbarbieri@gmail.com</email>
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<name>Alessandro Barbieri</name>
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</maintainer>
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<upstream>
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<bugs-to>https://github.com/Graph500/graph500/issues</bugs-to>
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<remote-id type="github">Graph500/graph500</remote-id>
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</upstream>
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</pkgmetadata>
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