mirrors/guru
1
0
Fork 0
mirror of https://github.com/gentoo-mirror/guru.git synced 2026-07-22 21:43:03 -04:00
Code Issues Packages Projects Releases Wiki Activity

sci-biology/cmdock: boinc fixes

Browse Source 
* Update cmdline to the upstream current. Particularly, the option that
  causes CmDock to get stuck in an infinite loop in 1-5% of runs is
  removed.

* Sync with boinc-app.eclass updates.

Closes: https://bugs.gentoo.org/935231
Signed-off-by: Anna (cybertailor) Vyalkova <cyber+gentoo@sysrq.in>
This commit is contained in:
Anna (cybertailor) Vyalkova
2024-07-09 20:56:46 +05:00
parent e9427f8954
commit 1a76004eaa
3 changed files with 20 additions and 21 deletions
Download Patch File Download Diff File Expand all files Collapse all files

14
sci-biology/cmdock/files/app_info_0.2.0.xml → sci-biology/cmdock/files/app_info_0.2.0-r1.xml
View File

@@ -1,22 +1,22 @@
<app_info>
<app>
<name>cmdock-l</name>
<user_friendly_name>CurieMarieDock 0.2.0 long tasks</user_friendly_name>
<user_friendly_name>CurieMarieDock @PV@ long tasks</user_friendly_name>
</app>
<file_info>
<name>cmdock-l_wrapper_@PV@</name>
<name>cmdock-l_wrapper</name>
<sticky/>
<executable/>
</file_info>
<file_info>
<name>cmdock-@PV@</name>
<name>cmdock</name>
<sticky/>
<executable/>
</file_info>
<file_info>
<name>cmdock-l_job_@PV@.xml</name>
<name>cmdock-l_job.xml</name>
<sticky/>
</file_info>
<file_info>
@@ -28,16 +28,16 @@
<app_name>cmdock-l</app_name>
<version_num>100</version_num>
<file_ref>
<file_name>cmdock-l_wrapper_@PV@</file_name>
<file_name>cmdock-l_wrapper</file_name>
<main_program/>
</file_ref>
<file_ref>
<file_name>cmdock-@PV@</file_name>
<file_name>cmdock</file_name>
<open_name>cmdock</open_name>
<copy_file/>
</file_ref>
<file_ref>
<file_name>cmdock-l_job_@PV@.xml</file_name>
<file_name>cmdock-l_job.xml</file_name>
<open_name>job.xml</open_name>
<copy_file/>
</file_ref>

2
sci-biology/cmdock/files/cmdock-l_job_0.2.0.xml → sci-biology/cmdock/files/cmdock-l_job_0.2.0-r1.xml
View File

@@ -2,7 +2,7 @@
<task>
<application>cmdock</application>
<stdout_filename>docking_log</stdout_filename>
<command_line>-c -j 1 -b 1 -x -r target.prm -p "@PREFIX@/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
<command_line>-c -j 1 -b 1 -r target.prm -p "@PREFIX@/data/scripts/dock.prm" -f htvs.ptc -i ligands.sdf -o docking_out</command_line>
<checkpoint_filename>docking_out.chk</checkpoint_filename>
<fraction_done_filename>docking_out.progress</fraction_done_filename>
<setenv>CMDOCK_ROOT=@PREFIX@</setenv>