From 082d434af1832d7995644d85cba5e6f8b1c537df Mon Sep 17 00:00:00 2001 From: Alessandro Barbieri Date: Tue, 15 Jun 2021 15:26:39 +0200 Subject: [PATCH] sys-cluster/extrae: install in /usr/lib(64) no more collision with openmpi now Package-Manager: Portage-3.0.19, Repoman-3.0.3 Signed-off-by: Alessandro Barbieri --- sys-cluster/extrae/extrae-3.8.3-r4.ebuild | 207 ++++++++++++++++++++++ sys-cluster/extrae/extrae-3.8.3-r5.ebuild | 207 ++++++++++++++++++++++ sys-cluster/extrae/metadata.xml | 4 +- 3 files changed, 416 insertions(+), 2 deletions(-) create mode 100644 sys-cluster/extrae/extrae-3.8.3-r4.ebuild create mode 100644 sys-cluster/extrae/extrae-3.8.3-r5.ebuild diff --git a/sys-cluster/extrae/extrae-3.8.3-r4.ebuild b/sys-cluster/extrae/extrae-3.8.3-r4.ebuild new file mode 100644 index 0000000000..dcbbd4dd01 --- /dev/null +++ b/sys-cluster/extrae/extrae-3.8.3-r4.ebuild @@ -0,0 +1,207 @@ +# Copyright 2019-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( pypy3 python3_{7,8,9} ) +inherit autotools java-pkg-opt-2 python-single-r1 + +DESCRIPTION="Instrumentation framework to generate execution traces of parallel runtimes" +HOMEPAGE="https://github.com/bsc-performance-tools/extrae" +SRC_URI="https://github.com/bsc-performance-tools/extrae/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="~amd64" +IUSE="boost clustering doc dwarf elf fft heterogeneous inotify +instrument-dynamic-memory +instrument-io +instrument-syscall merge-in-trace nanos opencl openmp +parallel-merge pebs-sampling +posix-clock pthread sampling +single-mpi-lib sionlib smpss +xml" +#aspectj and aspectj-weaver need to both be enabled at the same time +#current dev-java/aspectj package only provides aspectj.jar +#aspectj needs foo/lib/aspectj.jar and foo/bin/ajc +#aspectj-weaver needs bar/aspectjweaver.jar +#TODO: find out who is pulling in libpfm +#TODO: find out which FFT library is used +#TODO: remove some useflags (boost fft elf dwarf) +#TODO: pmapi online dyninst cuda spectral cupti openshmem gm mx synapse memkind aspectj +#TODO: support llvm libunwind, llvm rt, elftoolchain + +CDEPEND=" + ${PYTHON_DEPS} + app-arch/xz-utils + dev-libs/icu + dev-libs/libpfm + dev-libs/libxml2 + dev-libs/papi + sys-apps/hwloc + sys-libs/zlib + virtual/mpi + + || ( sys-libs/libunwind sys-libs/llvm-libunwind ) + || ( sys-devel/binutils:* sys-libs/binutils-libs ) + + boost? ( dev-libs/boost:= ) + clustering? ( sys-cluster/clusteringsuite ) + dwarf? ( dev-libs/libdwarf ) + elf? ( virtual/libelf ) + inotify? ( dev-libs/libevent ) + opencl? ( dev-util/opencl-headers ) + sionlib? ( sys-cluster/sionlib:= ) +" +# aspectj? ( >=dev-java/aspectj-1.9.6 ) +DEPEND=" + ${CDEPEND} + java? ( virtual/jdk:1.8 ) +" +RDEPEND=" + ${CDEPEND} + java? ( virtual/jre:1.8 ) + virtual/opencl +" +BDEPEND=" + doc? ( + app-text/ghostscript-gpl + dev-python/sphinx + dev-tex/latexmk + dev-texlive/texlive-latexextra + ) +" +REQUIRED_USE=" + ${PYTHON_REQUIRED_USE} + java? ( pthread ) +" +# cupti? ( cuda ) +# dyninst? ( boost dwarf elf ) +# online? ( synapse ) +# aspectj? ( java ) +# spectral? ( fft ) + +src_prepare() { + default + eautoreconf +} + +src_configure() { + export VARTEXFONTS="${T}/fonts" + + local myconf=( + --datadir="${T}" + --datarootdir="${T}" + --libdir="${EPREFIX}/usr/$(get_libdir)/extrae/lib" + + --disable-mic + --disable-online + --disable-peruse + --disable-pmapi + --disable-static + + --enable-shared + + --with-librt="${EPREFIX}/usr" + --with-mpi="${EPREFIX}/usr" + --with-papi="${EPREFIX}/usr" + --with-pic + --with-unwind="${EPREFIX}/usr" + + --without-dyninst + --without-cupti + --without-memkind + --without-synapse + --without-spectral + --without-openshmem + --without-gm + --without-mx + + $(use_enable doc) + $(use_enable heterogeneous) + $(use_enable inotify) + $(use_enable instrument-dynamic-memory) + $(use_enable instrument-io) + $(use_enable instrument-syscall) + $(use_enable merge-in-trace) + $(use_enable nanos) + $(use_enable openmp) + $(use_enable sampling) + $(use_enable parallel-merge) + $(use_enable pebs-sampling) + $(use_enable posix-clock) + $(use_enable pthread) + $(use_enable single-mpi-lib) + $(use_enable smpss) + $(use_enable xml) + ) +#--with-pmpi-hook (Choose method to call PMPI (dlsym or pmpi)) + +# if use aspectj; then +# myconf+=( "--with-java-aspectj=${EPREFIX}/usr/share/aspectj/lib" ) +# myconf+=( "--with-java-aspectj-weaver=${EPREFIX}/usr" ) +# else + myconf+=( "--without-java-aspectj-weaver" ) + myconf+=( "--without-java-aspectj" ) +# fi + if use boost; then + myconf+=( "--with-boost=${EPREFIX}/usr" ) + else + myconf+=( "--without-boost" ) + fi + if use clustering; then + myconf+=( "--with-clustering=${EPREFIX}/usr" ) + else + myconf+=( "--without-clustering" ) + fi + if use dwarf; then + myconf+=( "--with-dwarf=${EPREFIX}/usr" ) + else + myconf+=( "--without-dwarf" ) + fi + if use elf; then + myconf+=( "--with-elf=${EPREFIX}/usr" ) + else + myconf+=( "--without-elf" ) + fi + if use fft; then + myconf+=( "--with-fft=${EPREFIX}/usr" ) + else + myconf+=( "--without-fft" ) + fi + if use java; then + myconf+=( "--with-java-jdk=$(java-config -O)" ) + else + myconf+=( "--without-java-jdk" ) + fi + if use opencl; then + myconf+=( "--with-opencl=${EPREFIX}/usr" ) + else + myconf+=( "--without-opencl" ) + fi + + use sionlib && myconf+=( "--with-sionlib=${EPREFIX}/usr" ) + + econf "${myconf[@]}" +} + +src_install() { + default + + mkdir -p "${D}/$(python_get_sitedir)/" || die + mv "${ED}/usr/libexec/pyextrae" "${D}/$(python_get_sitedir)/" || die + python_optimize "${D}/$(python_get_sitedir)/pyextrae" + + #super-duper workaround + mkdir -p "${ED}/usr/share/doc/${PF}" || die + mv "${ED}/${T}/example" "${ED}/usr/share/doc/${PF}/examples" || die + mv "${ED}/${T}/tests" "${ED}/usr/share/doc/${PF}/" || die + + if use doc ; then + mv "${T}/docs"/* "${ED}/usr/share/doc/${PF}/" || die + mv "${T}/man" "${ED}/usr/share/" || die + docompress -x "/usr/share/doc/${PF}/html" + fi + docompress -x "/usr/share/doc/${PF}/examples" + docompress -x "/usr/share/doc/${PF}/tests" + + echo LDPATH="/usr/$(get_libdir)/extrae/lib" > 99extrae + insinto /etc/env.d + doins 99extrae + + find "${ED}" -name '*.a' -delete || die + find "${ED}" -name '*.la' -delete || die +} diff --git a/sys-cluster/extrae/extrae-3.8.3-r5.ebuild b/sys-cluster/extrae/extrae-3.8.3-r5.ebuild new file mode 100644 index 0000000000..a221e2b615 --- /dev/null +++ b/sys-cluster/extrae/extrae-3.8.3-r5.ebuild @@ -0,0 +1,207 @@ +# Copyright 2019-2021 Gentoo Authors +# Distributed under the terms of the GNU General Public License v2 + +EAPI=7 + +PYTHON_COMPAT=( pypy3 python3_{8,9} ) + +inherit autotools java-pkg-opt-2 python-single-r1 + +DESCRIPTION="Instrumentation framework to generate execution traces of parallel runtimes" +HOMEPAGE="https://github.com/bsc-performance-tools/extrae" +SRC_URI="https://github.com/bsc-performance-tools/extrae/archive/${PV}.tar.gz -> ${P}.tar.gz" + +LICENSE="LGPL-2.1" +SLOT="0" +KEYWORDS="~amd64" +IUSE="boost clustering doc dwarf elf fft heterogeneous inotify +instrument-dynamic-memory +instrument-io +instrument-syscall merge-in-trace nanos opencl openmp +parallel-merge pebs-sampling +posix-clock pthread sampling +single-mpi-lib sionlib smpss +xml" +#aspectj and aspectj-weaver need to both be enabled at the same time +#current dev-java/aspectj package only provides aspectj.jar +#aspectj needs foo/lib/aspectj.jar and foo/bin/ajc +#aspectj-weaver needs bar/aspectjweaver.jar +#TODO: find out who is pulling in libpfm +#TODO: find out which FFT library is used +#TODO: remove some useflags (boost fft elf dwarf) +#TODO: pmapi online dyninst cuda spectral cupti openshmem gm mx synapse memkind aspectj +#TODO: support llvm libunwind, llvm rt, elftoolchain + +CDEPEND=" + ${PYTHON_DEPS} + app-arch/xz-utils + dev-libs/icu + dev-libs/libpfm + dev-libs/libxml2 + dev-libs/papi + sys-apps/hwloc + !=sys-cluster/openmpi-4.0.5-r1[libompitrace] + sys-libs/zlib + virtual/mpi + + || ( sys-libs/libunwind sys-libs/llvm-libunwind ) + || ( sys-devel/binutils:* sys-libs/binutils-libs ) + + boost? ( dev-libs/boost:= ) + clustering? ( sys-cluster/clusteringsuite ) + dwarf? ( dev-libs/libdwarf ) + elf? ( virtual/libelf ) + inotify? ( dev-libs/libevent ) + opencl? ( dev-util/opencl-headers ) + sionlib? ( sys-cluster/sionlib:= ) +" +# aspectj? ( >=dev-java/aspectj-1.9.6 ) +DEPEND=" + ${CDEPEND} + java? ( virtual/jdk:1.8 ) +" +RDEPEND=" + ${CDEPEND} + java? ( virtual/jre:1.8 ) + virtual/opencl +" +BDEPEND=" + doc? ( + app-text/ghostscript-gpl + dev-python/sphinx + dev-tex/latexmk + dev-texlive/texlive-latexextra + ) +" +REQUIRED_USE=" + ${PYTHON_REQUIRED_USE} + java? ( pthread ) +" +# cupti? ( cuda ) +# dyninst? ( boost dwarf elf ) +# online? ( synapse ) +# aspectj? ( java ) +# spectral? ( fft ) + +src_prepare() { + default + eautoreconf +} + +src_configure() { + export VARTEXFONTS="${T}/fonts" + + local myconf=( + --datadir="${T}" + --datarootdir="${T}" + + --disable-mic + --disable-online + --disable-peruse + --disable-pmapi + --disable-static + + --enable-shared + + --with-librt="${EPREFIX}/usr" + --with-mpi="${EPREFIX}/usr" + --with-papi="${EPREFIX}/usr" + --with-pic + --with-unwind="${EPREFIX}/usr" + + --without-dyninst + --without-cupti + --without-memkind + --without-synapse + --without-spectral + --without-openshmem + --without-gm + --without-mx + + $(use_enable doc) + $(use_enable heterogeneous) + $(use_enable inotify) + $(use_enable instrument-dynamic-memory) + $(use_enable instrument-io) + $(use_enable instrument-syscall) + $(use_enable merge-in-trace) + $(use_enable nanos) + $(use_enable openmp) + $(use_enable sampling) + $(use_enable parallel-merge) + $(use_enable pebs-sampling) + $(use_enable posix-clock) + $(use_enable pthread) + $(use_enable single-mpi-lib) + $(use_enable smpss) + $(use_enable xml) + ) +#--with-pmpi-hook (Choose method to call PMPI (dlsym or pmpi)) + +# if use aspectj; then +# myconf+=( "--with-java-aspectj=${EPREFIX}/usr/share/aspectj/lib" ) +# myconf+=( "--with-java-aspectj-weaver=${EPREFIX}/usr" ) +# else + myconf+=( "--without-java-aspectj-weaver" ) + myconf+=( "--without-java-aspectj" ) +# fi + if use boost; then + myconf+=( "--with-boost=${EPREFIX}/usr" ) + else + myconf+=( "--without-boost" ) + fi + if use clustering; then + myconf+=( "--with-clustering=${EPREFIX}/usr" ) + else + myconf+=( "--without-clustering" ) + fi + if use dwarf; then + myconf+=( "--with-dwarf=${EPREFIX}/usr" ) + else + myconf+=( "--without-dwarf" ) + fi + if use elf; then + myconf+=( "--with-elf=${EPREFIX}/usr" ) + else + myconf+=( "--without-elf" ) + fi + if use fft; then + myconf+=( "--with-fft=${EPREFIX}/usr" ) + else + myconf+=( "--without-fft" ) + fi + if use java; then + myconf+=( "--with-java-jdk=$(java-config -O)" ) + else + myconf+=( "--without-java-jdk" ) + fi + if use opencl; then + myconf+=( "--with-opencl=${EPREFIX}/usr" ) + else + myconf+=( "--without-opencl" ) + fi + + use sionlib && myconf+=( "--with-sionlib=${EPREFIX}/usr" ) + + econf "${myconf[@]}" +} + +src_install() { + default + + #TODO: build examples + + mkdir -p "${D}/$(python_get_sitedir)/" || die + mv "${ED}/usr/libexec/pyextrae" "${D}/$(python_get_sitedir)/" || die + python_optimize "${D}/$(python_get_sitedir)/pyextrae" + + #super-duper workaround + mkdir -p "${ED}/usr/share/doc/${PF}" || die + mv "${ED}/${T}/example" "${ED}/usr/share/doc/${PF}/examples" || die + mv "${ED}/${T}/tests" "${ED}/usr/share/doc/${PF}/" || die + + if use doc ; then + mv "${T}/docs"/* "${ED}/usr/share/doc/${PF}/" || die + mv "${T}/man" "${ED}/usr/share/" || die + docompress -x "/usr/share/doc/${PF}/html" + fi + docompress -x "/usr/share/doc/${PF}/examples" + docompress -x "/usr/share/doc/${PF}/tests" + + find "${ED}" -name '*.a' -delete || die + find "${ED}" -name '*.la' -delete || die +} diff --git a/sys-cluster/extrae/metadata.xml b/sys-cluster/extrae/metadata.xml index 62a7dbbc59..9564c611b3 100644 --- a/sys-cluster/extrae/metadata.xml +++ b/sys-cluster/extrae/metadata.xml @@ -9,7 +9,7 @@ A dynamic instrumentation package to trace programs compiled and run with the shared memory model (like OpenMP and pthreads), the message passing (MPI) programming model or both programming models (different MPI processes using OpenMP or pthreads within each MPI -process). Extrae generates trace files that can be later visualized with sys-cluster/paraver. +process). Extrae generates trace files that can be later visualized with sys-cluster/paraver. https://github.com/bsc-performance-tools/extrae/issues @@ -33,7 +33,7 @@ process). Extrae generates trace files that can be later visualized with sy Enables instrumentation for system calls (other than I/O and mallocs) Enable support for tracing Java. This is necessary to create the connectors between |TRACE| and Java applications. Embed the merging process in the tracing library so the final tracefile can be generated automatically from the application run - Enable support for tracing sys-cluster/nanos run-time + Enable support for tracing sys-cluster/nanos6 run-time Enable support for tracing OpenCL Enable support for tracing OpenMP