From 00b2cc2eb3b223483b99274f0c8c805b7002f2f3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andr=C3=A9s=20Becerra?= <andres.becerra@gmail.com>
Date: Mon, 30 Oct 2023 20:46:21 +0000
Subject: [PATCH] New ebuild for JalView (binary)
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Signed-off-by: Andrés Becerra <andres.becerra@gmail.com>
---
 .../jalview-bin/jalview-bin-2.11.2.7.ebuild   | 35 +++++++++++++++++++
 sci-biology/jalview-bin/metadata.xml          | 16 +++++++++
 2 files changed, 51 insertions(+)
 create mode 100644 sci-biology/jalview-bin/jalview-bin-2.11.2.7.ebuild
 create mode 100644 sci-biology/jalview-bin/metadata.xml

diff --git a/sci-biology/jalview-bin/jalview-bin-2.11.2.7.ebuild b/sci-biology/jalview-bin/jalview-bin-2.11.2.7.ebuild
new file mode 100644
index 0000000000..a45faa4e69
--- /dev/null
+++ b/sci-biology/jalview-bin/jalview-bin-2.11.2.7.ebuild
@@ -0,0 +1,35 @@
+# Copyright 1999-2020 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+JAVA_PKG_WANT_TARGET=1.8
+
+inherit desktop java-pkg-2
+
+DESCRIPTION="Editor of multiple sequence alignments."
+HOMEPAGE="https://www.jalview.org/"
+SRC_URI="https://www.jalview.org/getdown/release/jalview-all-${PV}-j1.8.jar"
+
+LICENSE="Apache-2.0"
+SLOT="0"
+IUSE=""
+KEYWORDS="~amd64 ~x86"
+
+DEPEND="app-arch/unzip"
+
+RDEPEND="virtual/jre:1.8"
+
+S="${WORKDIR}"
+
+src_unpack() {
+	cp -v "${DISTDIR}/${A}" . || die
+	unzip -u ${A} images/jalview_logo-48.png || die
+}
+
+src_install() {
+	java-pkg_newjar "jalview-all-${PV}-j1.8.jar"
+	java-pkg_dolauncher "${PN}" --jar "${PN}.jar"
+	newicon images/jalview_logo-48.png jalview_logo_48.png
+	make_desktop_entry "${PN}" JalView jalview_logo_48 Science
+}
diff --git a/sci-biology/jalview-bin/metadata.xml b/sci-biology/jalview-bin/metadata.xml
new file mode 100644
index 0000000000..ba5084d0c1
--- /dev/null
+++ b/sci-biology/jalview-bin/metadata.xml
@@ -0,0 +1,16 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer type="person">
+		<email>andres.becerra@gmail.com</email>
+		<name>Andrés Becerra Sandoval</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>sci-biology@gentoo.org</email>
+		<name>>Gentoo Biology Project</name>
+	</maintainer>
+	<maintainer type="project">
+		<email>proxy-maint@gentoo.org</email>
+		<name>Proxy Maintainers</name>
+	</maintainer>
+</pkgmetadata>